| Protein: | vam6 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 905 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vam6.
| Description | E-value | Query Range |
Subject Range |
|
|
597.0 | [0..1] | [898..39] |
|
|
584.0 | [0..1] | [898..1] |
|
|
584.0 | [0..1] | [898..1] |
|
|
583.0 | [0..1] | [898..1] |
|
|
582.0 | [0..1] | [898..1] |
|
|
581.0 | [0..1] | [898..1] |
|
Region A: Residues: [1-288] |
1 11 21 31 41 51
| | | | | |
1 MHRAFSLYRV LELSKARVEC VFELGGLVYV SNSNGDLDSY KIYNNEEEEA ADFVMEHVDV 60
61 YPNFTKKPIT KVVSCATQDI FYALSDSQVY VYQISTFKKL FSFGAHCQNM CLYGDELIVL 120
121 SSKKNLEIYE IQKNSKPNLT KTISLNDRPR SLAWVSPTMI LVSLSNDFCA VNTETSRISS 180
181 LNLAWQQSSS LGLGISYIGM SIKSNKLHIT RISDDEVLLS KDSQGLLVNL KSLQVSRNPL 240
241 RWPTVPQAVI YNSPYIITLH NQYIYIWNKE TYAMIQQIGI SNIYSTFS
|
| Detection Method: |  |
| Confidence: | 1.24 |
| Match: | 2i3sA |
| Description: | No description for 2i3sA was found. |
| Term | Confidence | Notes |
| binding | 2.23598589443994 | bayes_pls_golite062009 |
| transporter activity | 1.23232041140488 | bayes_pls_golite062009 |
| protein binding | 1.16796757764458 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.750051725890322 | bayes_pls_golite062009 |
| hydrolase activity | 0.346903609858078 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.271959658140432 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0560845588891794 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0245411309982146 | bayes_pls_golite062009 |
|
Region A: Residues: [289-905] |
1 11 21 31 41 51
| | | | | |
1 CHKNTFFTSN SYVWILTPED FSNQIEALLN TENLNEAISV LSQITVSQFP KRDYYLRITK 60
61 REKALRSFSS GDYDLAMRLF SEISESPSTV LGLFPGLLDN NYSDAISILS MAPSQNESIE 120
121 SNVLFPGNHS NSQTDLRNGD AVSTVANNKR LRSLSTYLTD SRRKANRFLS YDEEHYFLQK 180
181 KNLFLNADGT LVAKEKLEKI AVQIDTTLFL IYMISSPALV GSLLRLPNRC ETSVVETNLL 240
241 SAKMYRELVE YYYGKSLHEA ALDLLTKLCD EPTDTLSLKG KSNTTSKYEP ILSYLEKLSP 300
301 ELDHLIFKYS RVPLSEDPQN SIVIFIDENS EASTISKGVV LKYLETISYK VSIIYLEKLL 360
361 LDNKFNDTVF PTRLALLYLK RILELEETTD FKNQEVFKQT IEKLEDYLTN SKQYDANVVL 420
421 QEINSQDEFL STVSIILYRR LSRHQDALDV YLKILNDWEG ALSYCNSVYS IDGETEPYYM 480
481 LLAEISKNYK SGSLNILDFI TKYSSRLDLN RVFPLLPKNI SMKSYHSLFS SQFRQLFEEL 540
541 SNKETQSKLY QKRLEDLNEE LTKVRSEKVV ITREKTCLFC HKRLGKSVIS IFPDGSVVHY 600
601 GCAKKYVSSN HLPYEAY
|
| Detection Method: | |
| Confidence: | 77.0 |
| Match: | 1xi4A |
| Description: | Clathrin D6 Coat |
Matching Structure (courtesy of the PDB): |
|
