YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC530.08
Organism:	Schizosaccharomyces pombe
Length:	815 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC530.08.

Description	E-value	Query Range	Subject Range
gi\|67536776, gi\|... - gi\|67536776\|ref\|XP_662162.1\| hypothetical protein AN4558.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	304.0	[0..1]	[778..42]
gi\|85081614 - gi\|85081614\|ref\|XP_956755.1\| hypothetical protein NCU01478 [Neurospora crassa OR74A] gi\|28917831, gi\|... - gi\|32414875\|ref\|XP_327917.1\| hypothetical protein [Neurospora crassa], gi\|28917831\|gb\|EAA27519.1\| hy...	303.0	[0..17]	[782..55]
gi\|169775145 - gi\|169775145\|ref\|XP_001822040.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769903 - gi\|83769903\|dbj\|BAE60038.1\| unnamed protein product [Aspergillus oryzae]	298.0	[0..4]	[797..44]
gi\|38566844 - gi\|38566844\|emb\|CAE76150.1\| related to transcriptional activator Mut3p [Neurospora crassa]	296.0	[0..17]	[782..55]
gi\|21913144 - gi\|21913144\|gb\|AAK84946.1\| transcriptional activator Mut3p [Pichia angusta] gi\|134147412 - gi\|134147412\|gb\|ABO63963.1\| transcriptional activator Mut3p [synthetic construct]	290.0	[0..1]	[803..39]
gi\|119194841, gi... - gi\|90306810\|gb\|EAS36441.1\| hypothetical protein CIMG_01795 [Coccidioides immitis RS], gi\|119194841\|r...	289.0	[0..2]	[778..34]
ASG1_YEAST - Activator of stress genes 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASG1 PE=1 SV... ASG1 - Zinc cluster protein proposed to function as a transcriptional regulator involved in the stress resp...	272.0	[0..11]	[764..1]
gi\|114190592, gi... - gi\|115386106\|ref\|XP_001209594.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	271.0	[0..1]	[802..40]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNESHSQET ESKILEGAKV ATRRRRVTRA CDMCRRKKIK CDGLRPCKNC KAGKLECTYH  60
   61 MPSSRKSSFS PEYVENLESR VRYLETLLKK NTNFDLSSNS PSFLFFLREQ KFQATNELEN 120
  121 MSPERKVIFT SMINYGNLFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1ajyA
Description:	PUT3
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [141-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAKHGTRYFR GGSSIHVLIQ HLIRRLPGDF EICEPYSAYP LGNKNIQFDD NDPEYQFFTP  60
   61 TPRFSIDFMV SSVDPREIQL PGIEEALCIT KAAVSYVSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [240-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVFYTTYADF PKKIRLLYSG NYQGNFFPLF LSILCVGYYH HLLNNPSNTE LQSLIKKYSF  60
   61 YSERLVKSAD NFTIESIQCL LILSIYRYCR TEISAAWYYM KLGLNCCLRL GLHRNITEGF 120
  121 TEEQIDSRRR IFWAIYCYDR QLCTLFGFPL GVRDEDIDQC LPVTPKFPSV TEIEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.21467
Match:	PF04082.5
Description:	No description for PF04082.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [415-635]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NARLFFFHGV KLYKISSRIL TKLYSPNSRN VTKKHISYAV IQDLEQLLDG FYNSLPRVFR  60
   61 AEQPGEFQAN HFFYNLQLVY YSFRMLIYRP LLHYLEADSP AMQALKVPDR QTAFTLACKC 120
  121 VDSAIVCVQN LSHLSKGLKR TLDRYYWTTV YCGFSTIVTL IFAALLTKNT NLLIHISVAR 180
  181 ESIEALAHEC VTRRLLPLID KMRESLMKIL ESNADGYKQM S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [636-722]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTKAPQVFES ESNVPINNGP QQSIDKESNS NTQLPQVETE GQQQSVFDGN IGTIPYQAYN  60
   61 MNEDSFIDIN TLSSMLNYHT QAVSIHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [723-815]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFYISRSDV PLEEEFQIPN ELLAVDPVAE SMQENSDIIN EAFGLVDPDV SDGKSRESSS  60
   61 LNNSTPFNPT VNIDPASILE HFSQNVMKDS QNS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits