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Protein Overview: SPBC530.08

General Information:
Name(s) found: SPBC530.08 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 815 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    integral to membrane [IEA]
    cytosol [IDALink to PubMed article]
    chromatin [RCALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNESHSQET ESKILEGAKV ATRRRRVTRA CDMCRRKKIK CDGLRPCKNC KAGKLECTYH  60
   61 MPSSRKSSFS PEYVENLESR VRYLETLLKK NTNFDLSSNS PSFLFFLREQ KFQATNELEN 120
  121 MSPERKVIFT SMINYGNLFV DAKHGTRYFR GGSSIHVLIQ HLIRRLPGDF EICEPYSAYP 180
  181 LGNKNIQFDD NDPEYQFFTP TPRFSIDFMV SSVDPREIQL PGIEEALCIT KAAVSYVSGI 240
  241 VFYTTYADFP KKIRLLYSGN YQGNFFPLFL SILCVGYYHH LLNNPSNTEL QSLIKKYSFY 300
  301 SERLVKSADN FTIESIQCLL ILSIYRYCRT EISAAWYYMK LGLNCCLRLG LHRNITEGFT 360
  361 EEQIDSRRRI FWAIYCYDRQ LCTLFGFPLG VRDEDIDQCL PVTPKFPSVT EIEANARLFF 420
  421 FHGVKLYKIS SRILTKLYSP NSRNVTKKHI SYAVIQDLEQ LLDGFYNSLP RVFRAEQPGE 480
  481 FQANHFFYNL QLVYYSFRML IYRPLLHYLE ADSPAMQALK VPDRQTAFTL ACKCVDSAIV 540
  541 CVQNLSHLSK GLKRTLDRYY WTTVYCGFST IVTLIFAALL TKNTNLLIHI SVARESIEAL 600
  601 AHECVTRRLL PLIDKMRESL MKILESNADG YKQMSPTKAP QVFESESNVP INNGPQQSID 660
  661 KESNSNTQLP QVETEGQQQS VFDGNIGTIP YQAYNMNEDS FIDINTLSSM LNYHTQAVSI 720
  721 HHPSFYISRS DVPLEEEFQI PNELLAVDPV AESMQENSDI INEAFGLVDP DVSDGKSRES 780
  781 SSLNNSTPFN PTVNIDPASI LEHFSQNVMK DSQNS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] PSI-BLAST 7.0 PUT3
    2 View Details [141..239] deduced N/A No confident structure predictions are available.
    3 View Details [240..414] Pfam 23.21467 No description for PF04082.5 was found. No confident structure predictions are available.
    4 View Details [415..635] deduced N/A No confident structure predictions are available.
    5 View Details [636..722] deduced N/A No confident structure predictions are available.
    6 View Details [723..815] MSA 2.251993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.20

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle