| Protein: | rad60 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 406 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rad60.
| Description | E-value | Query Range |
Subject Range |
|
|
58.0 | [0..134] | [405..112] |
|
|
53.0 | [0..181] | [405..139] |
|
Region A: Residues: [1-239] |
1 11 21 31 41 51
| | | | | |
1 MDNLDEDDLA FFSKPIKKPP LNYAKQLIAS SSDSEEESEL DTNKQALEHI NAQKNITHNE 60
61 NKSAEPLSRQ STILDADEGN QDVSDTTPNA CLNEGRHSPK SAISCVTQPV SPVYNTRAAA 120
121 NLRNNSINSE AALSTTSSLL DDDFARRLEE IDRQVQEFEK SSSDMDVQIH THKREIEEDD 180
181 DNTSADVPLL KHSKSDHSTL YHSKSEFSTN EPVISVVLQL AVIGQRIPNS NISLPRDWE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [240-406] |
1 11 21 31 41 51
| | | | | |
1 APLFFKVKSN QQFRRVRIAY SERKKVDNVV LVFQNQRLWD YGTPKGAGML KVDTRLVVHA 60
61 YCHSDFISLK RIKELEVEKL SSVTEDSTAQ TCKLITLLLR SSKSEDLRLS IPVDFTVKDL 120
121 IKRYCTEVKI SFHERIRLEF EGEWLDPNDQ VQSTELEDED QVSVVLD
|
| Detection Method: | |
| Confidence: | 2.89 |
| Match: | 1a5rA |
| Description: | STRUCTURE DETERMINATION OF THE SMALL UBIQUITIN-RELATED MODIFIER SUMO-1, NMR, 10 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.11588141989606 | bayes_pls_golite062009 |
| protein binding | 1.47732819196717 | bayes_pls_golite062009 |
| nucleic acid binding | 1.00159394999838 | bayes_pls_golite062009 |
| transcription regulator activity | 0.893208558353811 | bayes_pls_golite062009 |
| DNA binding | 0.728116087736496 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0203697312404174 | bayes_pls_golite062009 |
