YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16G5.09
Organism:	Schizosaccharomyces pombe
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16G5.09.

Description	E-value	Query Range	Subject Range
SCP26_ARATH - Serine carboxypeptidase-like 26 OS=Arabidopsis thaliana GN=SCPL26 PE=2 SV=1	459.0	[0..19]	[452..18]
KEX1_NEUCR - Pheromone-processing carboxypeptidase kex1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CB... gi\|28922496, gi\|... - gi\|32406086\|ref\|XP_323656.1\| hypothetical protein [Neurospora crassa], gi\|28950176\|emb\|CAD71044.1\| r...	451.0	[0..1]	[459..14]
CBP23_HORVU - Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1 gi\|474392 - gi\|474392\|emb\|CAA55478.1\| serine carboxylase II-3 [Hordeum vulgare subsp. vulgare]	448.0	[0..24]	[461..79]
gi\|215695255, gi... - gi\|53792537\|dbj\|BAD53501.1\| putative serine carboxylase II-2 [Oryza sativa Japonica Group], gi\|22261...	448.0	[0..5]	[455..15]
gi\|18447763 - gi\|18447763\|gb\|AAL67992.1\| putative serine carboxypeptidase precursor [Gossypium hirsutum]	448.0	[0..36]	[450..85]

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Predicted Domain #1

Region A:
Residues: [1-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKLLKIVL LTAGVIGNTL ADSRIHEQYL VKAFPNEPVD YEGRMHAGHL NQTDQLDGDL  60
   61 FFWMFESVKP EYEHRSILWL NGGPGCSSED GSLMEVGPFR LDDNNTFQLN PGRWDELGNL 120
  121 LFVDQPLGTG YSYSLAKDFQ SNNEKMANDF SIFFEKFLEE FPERANDEWF IAGESFAGQY 180
  181 IPHIAAKLKE KNLVNLGGLA IGNGWINPLS HYETYLNYLV EKGMVDFESE LGQYLHHSWA 240
  241 ECLLAFDKIG SGSGDLSKCE SFLGDILYMV SKEPGKACMN MYDISLESTY PTCGMDWPYD 300
  301 LSYLTEFLST REAMTSLNVN LEKVHDWEEC NDDVALQYAR EGIESSSKLI QDLVSTVPIL 360
  361 LFYGENDFLC NYLSGEKLTR SLEWNGAVGF QNQSAQPFYL PGYSDQPSGS YVSSRNLTFA 420
  421 RIVEASHMVP YDHPNEMKTL ITAFFNNDFA SLPSVPKPSP DLGNGNYKWL YLGLIPVALT 480
  481 IIILFSIYLC RRFGLFGLSK QRYQPISPTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.154902
Match:	1ac5A
Description:	CRYSTAL STRUCTURE OF KEX1(DELTA)P, A PROHORMONE-PROCESSING CARBOXYPEPTIDASE FROM SACCHAROMYCES CEREVISIAE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	4.09944423676394	bayes_pls_golite062009
peptidase activity	2.49064988313037	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.10044305272656	bayes_pls_golite062009
catalytic activity	1.39629727416851	bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity	1.3250951453762	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.541803897301601	bayes_pls_golite062009
endopeptidase activity	0.35106325845064	bayes_pls_golite062009
binding	0.351031277062254	bayes_pls_golite062009
palmitoyl-CoA hydrolase activity	0.1174692258176	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: