| Protein: | sen54 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 384 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sen54.
| Description | E-value | Query Range |
Subject Range |
|
|
380.0 | [0..1] | [372..1] |
|
|
379.0 | [0..15] | [375..16] |
|
|
351.0 | [0..1] | [347..4] |
|
|
300.0 | [0..1] | [373..1] |
|
|
298.0 | [0..1] | [369..3] |
|
|
295.0 | [0..14] | [360..39] |
|
|
294.0 | [0..16] | [384..20] |
|
|
284.0 | [0..1] | [373..4] |
|
|
270.0 | [0..2] | [316..9] |
|
|
252.0 | [0..16] | [364..22] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MDAQDEDNPF TNLETTVDVT EEIQDWRFLS NVEKDQGTYT IPKRGQKDFE PDGTNKQHSA 60
61 LDLSRKAMFD ALSVERLISA KHAIIATWNA QNGMSCVEK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.468 | a.24.3 | Cytochromes |
| View | Download | 0.304 | a.2.3 | Chaperone J-domain |
| View | Download | 0.310 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.353 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.312 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
|
Region A: Residues: [100-254] |
1 11 21 31 41 51
| | | | | |
1 AHGPLFKTMG TADSQNRMWL LPEETLYLVE RGSMECWSEE GLPMSLQAVY SASIPLCGSL 60
61 ENYLVYAHLR RCGFSVIRSN LVPVKEDEYR CDSKIMNFKD LLFLGLGKAS QILQTFNFRK 120
121 LAFPFSKRRR QSILLHDTFY TYEEVYHDLQ IVRGY
|
| Detection Method: | |
| Confidence: | 37.39794 |
| Match: | 2cv8A |
| Description: | Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [255-384] |
1 11 21 31 41 51
| | | | | |
1 VPIACNLITS SDSLFQITFH AYKPSASFKK SALSEPDFRI CVVSSQDTLL PTIFEIDALF 60
61 SSTPLRQNMP QHMFQRLKEG YRNIIIAIVD YGVISYIRLS DVCFEEKVYT DFSKKGSKRK 120
121 RVSKKFQQLV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.410 | 0.230 | tRNA-intron endonuclease activity | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.398 | 0.186 | tRNA-intron endonuclease activity | d.93.1 | SH2 domain |
| View | Download | 0.417 | 0.033 | tRNA-intron endonuclease activity | a.64.1 | Saposin |
| View | Download | 0.595 | 0.032 | tRNA-intron endonuclease activity | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.339 | N/A | N/A | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
