| Protein: | est1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 490 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for est1.
| Description | E-value | Query Range |
Subject Range |
|
|
374.0 | [0..20] | [387..297] |
|
|
372.0 | [0..20] | [387..10] |
|
|
371.0 | [0..20] | [387..28] |
|
|
371.0 | [0..20] | [387..36] |
|
Region A: Residues: [1-394] |
1 11 21 31 41 51
| | | | | |
1 MSQQLSSNEI CEEQGKLVKA LCEAAQGGFK HDLYEKIIAI EIEVEKKLLN RLKSIQTNTF 60
61 ERPDIIWSCC HYKIIQHFRS RFREIHPRHV VEKKKTKKVF FKFLKTCAIF YQTCISELIS 120
121 KFQLDSYRPF FCKWTSSATV SSTISNDEMS SIPEASYSRN HMEALECVYN CFIYLGDMAR 180
181 YSSTCLKKRG AYDRALGFYD LAHRTLPGNG MHRNQIAVVW ASDECIVESI YWFSSALCSE 240
241 DPPKSALLNL LKQLIAFYRR CFAVHFEFVS PMMILLFIIS DCCIHSLKEI QPFKCPSIMV 300
301 KDLENSLLQS NIRNVGYEKK NLYYISSAFS NLLHCRYFNC NDRLRSFYYR FSSWLFHQTL 360
361 ACAKEVESER APTSYLTSCL PSIKVILARV LESS
|
| Detection Method: |  |
| Confidence: | 95.69897 |
| Match: | 1ya0A |
| Description: | Crystal structure of the N-terminal domain of human SMG7 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.52126334054344 | bayes_pls_golite062009 |
| protein binding | 1.52807685989528 | bayes_pls_golite062009 |
| transcription regulator activity | 1.02070055347338 | bayes_pls_golite062009 |
| nucleic acid binding | 1.01193875360949 | bayes_pls_golite062009 |
| DNA binding | 0.80346414607277 | bayes_pls_golite062009 |
| transcription factor activity | 0.134824164012026 | bayes_pls_golite062009 |
| RNA binding | 0.0901814112095951 | bayes_pls_golite062009 |
| signal sequence binding | 0.0231142793406351 | bayes_pls_golite062009 |
|
Region A: Residues: [395-490] |
1 11 21 31 41 51
| | | | | |
1 PAFGFIERNE LEQLSYHFRI CEKFFKESSE NKMLNLFEDY NEFGLCKSFI CLFKRLNEDI 60
61 IGPKLNINPP DYTTHPFSES IKRFYQISKI LNLLLS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
