| Protein: | SPBC27B12.11c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 738 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC27B12.11c.
| Description | E-value | Query Range |
Subject Range |
|
|
210.0 | [0..10] | [547..578] |
|
|
192.0 | [0..43] | [544..664] |
|
|
188.0 | [0..4] | [545..6] |
|
|
182.0 | [0..4] | [487..464] |
|
|
180.0 | [0..4] | [551..771] |
|
|
176.0 | [0..8] | [553..145] |
|
|
175.0 | [0..4] | [549..1377] |
|
|
168.0 | [0..9] | [552..324] |
|
|
167.0 | [0..4] | [552..115] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MQKKVVQSAS KNEELDPHYK RSSVPFPYGL PDYDAEYQFI NHHMQQLLTR PVEGTHSASV 60
61 HPSTSSTSHI SS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [73-248] |
1 11 21 31 41 51
| | | | | |
1 PSAFSVQNPN PNDAPFVGNI GLDASGFSSG GMSEYYPRSV SMQQSQDVHF QNTEIPYYHR 60
61 SPSSDSFSPG VVASVNPNSN NSPTFYSNPP ALSNIPIPLN NSPYRPEDAY FQLQGAGVKA 120
121 DINPYNLSPY SQYGPEGTAY SNAQAHHQDG APLQRVCSAP DPPKTSMPPF GSAGSP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [249-392] |
1 11 21 31 41 51
| | | | | |
1 SPNRSLNVSN NTTPPLSTVN KIIKKPKATT GKVKKRLPQA KRACAKCQKD NKKCDDARPC 60
61 QRCIKAKTDC IDLPRKKRPT GVRRGPYKKL SDTSNNTKST TASSGHSTQD SLSSKMLDPS 120
121 SDNQFAMSSR QMDENGMAQY PSSA
|
| Detection Method: | |
| Confidence: | 1.38 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.80191339934741 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.67344049333457 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.50774349911815 | bayes_pls_golite062009 |
| transcription activator activity | 0.822069987038721 | bayes_pls_golite062009 |
|
Region A: Residues: [393-551] |
1 11 21 31 41 51
| | | | | |
1 IKQELNLQPQ ILVSSASKNF QPNVTPPFAV HHDHFNSTSM DGVAVSNMDE TGTSSAGSKP 60
61 FNRKSRNRSF TNPVGMTEEH FLREYAQHSV ANPSLLIHQI HGLPSEQVHG LLSHTELGNA 120
121 MHNQPTYNES SIAAENVNNW MLETNDHENL SMQSHFEVP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [552-738] |
1 11 21 31 41 51
| | | | | |
1 DLKMNHHDSS FFDRHIDQTA MPGQNQHGTV KNMETMHHFY PDVHNSEFPA APNPVKSQVP 60
61 YYYQSQAADD EEEDVPDHQP SWRGRIHSFS IATDSSQHVV ERPCIHSLRG IHGQQDGGLE 120
121 QHDGDHVNML PDTHAEELAY TSMLLFHDIP TRDIRPDFNV HELVDHGTYP NFHQNQADSF 180
181 KNHPFRQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
