YRC Public Data Repository - Protein Structure Prediction

Protein:	zta1
Organism:	Schizosaccharomyces pombe
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for zta1.

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	304.0	[0..3]	[322..12]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	294.0	[0..3]	[323..1]
gi\|71733591, gi\|... - gi\|71733591\|ref\|YP_272602.1\| quinone oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], g...	291.0	[0..3]	[323..1]
gi\|63254289, gi\|... - gi\|66043582\|ref\|YP_233423.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	290.0	[0..3]	[326..1]
gi\|70997521, gi\|... - gi\|70997521\|ref\|XP_753506.1\| quinone oxidoreductase [Aspergillus fumigatus Af293], gi\|66851142\|gb\|EA... gi\|159126764 - gi\|159126764\|gb\|EDP51880.1\| quinone oxidoreductase, putative [Aspergillus fumigatus A1163]	288.0	[0..2]	[322..56]
gi\|77385669, gi\|... - gi\|77461666\|ref\|YP_351173.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	288.0	[0..3]	[322..1]
gi\|68347561, gi\|... - gi\|70733262\|ref\|YP_263035.1\| oxidoreductase, zinc-binding [Pseudomonas fluorescens Pf-5], gi\|6834756...	287.0	[0..3]	[322..1]
gi\|15234529, gi\|... - pir\|\|T05166 quinone reductase homolog F18E5.200 - Arabidopsis thaliana, gi\|7268955\|emb\|CAB81265.1\| p...	284.0	[0..3]	[321..1]
gi\|89351306, gi\|... - gi\|89359757\|ref\|ZP_01197577.1\| quinone oxidoreductase [Xanthobacter autotrophicus Py2], gi\|89351306\|...	284.0	[0..2]	[321..9]
gi\|84317897, gi\|... - gi\|84317897\|ref\|ZP_00966332.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|116053381, gi... - gi\|32044610\|ref\|ZP_00141711.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|107104336 - gi\|107104336\|ref\|ZP_01368254.1\| hypothetical protein PaerPA_01005411 [Pseudomonas aeruginosa PACS2]	283.0	[0..3]	[322..1]

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Predicted Domain #1

Region A:
Residues: [1-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLLVQVSK TGPSSVLQVI TKEIPKPAPN GLVIKNAYAG LNYIDTYLRT GLYTAPLPYI  60
   61 PGKEAAGVVA AVGDKVEADF KVGDRVVYLT PFGAYAQYTN VPTTLVSKVS EKIPLKIASA 120
  121 ALLQGLTAYT LIEEAYPVKT GDTVVVHAAA GGVGLLLCQM LRARNVHVIA TASTAAKRRI 180
  181 AIKNGAEIAC SYEDLTKVVA DYTNGKGVDA AYDSVGIDTL SSSLDALRNG GTMVSFGNAS 240
  241 GAIDAIPLKF LSARCLKFVR PSLFGYITGH AVFEGYVSRL WKEILDNNLN IAIHHIFKLS 300
  301 EAKEAHDAIE SRATTGKLLL LCNEDLADA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.39794
Match:	1qorA
Description:	Quinone oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alcohol dehydrogenase (NAD) activity	2.94416173750168	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	2.26153457113968	bayes_pls_golite062009
oxidoreductase activity	1.98266850665386	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
retinol dehydrogenase activity	1.04497968922284	bayes_pls_golite062009
binding	0.982999356179965	bayes_pls_golite062009
nucleic acid binding	0.980245559401213	bayes_pls_golite062009
DNA binding	0.940078857029005	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.903132922944611	bayes_pls_golite062009
transcription regulator activity	0.854100257756792	bayes_pls_golite062009
RNA binding	0.843556706364142	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.8131556272556	bayes_pls_golite062009
chaperone binding	0.593082758130032	bayes_pls_golite062009
protein binding	0.507836099271263	bayes_pls_golite062009
transcription factor activity	0.35056694435192	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: