| Protein: | chp2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 380 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chp2.
| Description | E-value | Query Range |
Subject Range |
|
|
184.0 | [0..38] | [340..13] |
|
Region A: Residues: [1-171] |
1 11 21 31 41 51
| | | | | |
1 MVKSADLDLM NSIISESDEN FSPPPFTVEE AENSINNKSS TASLESPQNG SWHPSLYGLS 60
61 VPEKTHIQNS LDLYSHGNSG SQKTHNVSFS CEIRKVKSSK LSPISNMEDS EDKKEEDESS 120
121 SYKNEFKSSS SASVSSNFEK TSGSDDHNSQ SPVPLNEGFE YIASSGSEDK N
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [172-313] |
1 11 21 31 41 51
| | | | | |
1 SDEEFAVEMI LDSRMKKDGS GFQYYLKWEG YDDPSDNTWN DEEDCAGCLE LIDAYWESRG 60
61 GKPDLSSLIR LTRSRARSSN EASYVEKDES SNSDDSISYK RRRSRNAANR ITDYVDSDLS 120
121 ESSMKEKQSK IEKYMKSDKS SK
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 2b2uA |
| Description: | Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription repressor activity | 4.08500855631983 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64390820819794 | bayes_pls_golite062009 |
| chromatin binding | 3.1924157640698 | bayes_pls_golite062009 |
| methylated histone residue binding | 3.18095357415772 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| nucleic acid binding | 2.19167058827256 | bayes_pls_golite062009 |
| DNA binding | 2.05514577638135 | bayes_pls_golite062009 |
| protein binding | 1.61683263008775 | bayes_pls_golite062009 |
| histone binding | 1.37812404837999 | bayes_pls_golite062009 |
| general transcriptional repressor activity | 0.75184432495983 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.294457188332415 | bayes_pls_golite062009 |
| satellite DNA binding | 0.158790063943709 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
| transcription activator activity | 0.136090220479238 | bayes_pls_golite062009 |
|
Region A: Residues: [314-380] |
1 11 21 31 41 51
| | | | | |
1 NFKPPFQKKS WEDLVDCVKT VQQLDNGKLI AKIKWKNGYV STHDNIIIHQ KCPLKIIEYY 60
61 EAHIKFT
|
| Detection Method: | |
| Confidence: | 11.045757 |
| Match: | 1e0bA |
| Description: | Heterochromatin protein 1, HP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription repressor activity | 4.08500855631983 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64390820819794 | bayes_pls_golite062009 |
| chromatin binding | 3.1924157640698 | bayes_pls_golite062009 |
| methylated histone residue binding | 3.18095357415772 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| nucleic acid binding | 2.19167058827256 | bayes_pls_golite062009 |
| DNA binding | 2.05514577638135 | bayes_pls_golite062009 |
| protein binding | 1.61683263008775 | bayes_pls_golite062009 |
| histone binding | 1.37812404837999 | bayes_pls_golite062009 |
| general transcriptional repressor activity | 0.75184432495983 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.294457188332415 | bayes_pls_golite062009 |
| satellite DNA binding | 0.158790063943709 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
| transcription activator activity | 0.136090220479238 | bayes_pls_golite062009 |
