| Protein: | spp27 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 233 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spp27.
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..34] | [233..433] |
|
|
234.0 | [0..34] | [233..330] |
|
|
228.0 | [0..34] | [233..204] |
|
|
228.0 | [0..34] | [233..199] |
|
|
228.0 | [0..34] | [233..276] |
|
|
228.0 | [0..34] | [233..330] |
|
Region A: Residues: [1-61] |
1 11 21 31 41 51
| | | | | |
1 MEEYETDIKQ ILGTVDRQTV SAKQVRQLLE ERRKVDLSAH KKDLNALILK CFDETAAPSE 60
61 K
|
| Detection Method: |  |
| Confidence: | 2.14 |
| Match: | 1q1vA |
| Description: | Structure of the Oncoprotein DEK: a putative DNA-binding Domain Related to the Winged Helix Motif |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.63842828741542 | bayes_pls_golite062009 |
| transcription regulator activity | 2.62775554429027 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.953438255689584 | bayes_pls_golite062009 |
| histone binding | 0.948950535074526 | bayes_pls_golite062009 |
| protein binding | 0.529408559970229 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.439630834571696 | bayes_pls_golite062009 |
|
Region A: Residues: [62-233] |
1 11 21 31 41 51
| | | | | |
1 ESLEKQAPAR KTKGKRATEN GTEEGKKPAK RTRKRKEDGE EGGKRKRNQD PANNPLNKPM 60
61 KLSPKLAEFL GLEQLSRPQT VKKLWEYIKA HDLQDPNDKR TILCDDKLKS VFEVDTLHMF 120
121 TMNKYLTNLM TKIPDDQLPK PQPKNEEPAA PNDLPKQEEK ELVEPPTAES TA
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 1uhrA |
| Description: | Solution structure of the SWIB domain of mouse BRG1-associated factor 60a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.01592136607858 | bayes_pls_golite062009 |
| binding | 3.20303599400601 | bayes_pls_golite062009 |
| basal transcription repressor activity | 2.69162769894095 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.58234407051051 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98538788872171 | bayes_pls_golite062009 |
| transcription activator activity | 1.83085389017135 | bayes_pls_golite062009 |
| transcription factor binding | 1.73032563380905 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.60414428986898 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.51390743508971 | bayes_pls_golite062009 |
| protein binding | 1.38134467541454 | bayes_pls_golite062009 |
| ligase activity | 0.802664465339603 | bayes_pls_golite062009 |
| structural molecule activity | 0.66106995897056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.15313128037113 | bayes_pls_golite062009 |
| catalytic activity | 0.121624777548864 | bayes_pls_golite062009 |
