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View Structure Prediction Details

Protein: SPAC343.13
Organism: Schizosaccharomyces pombe
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC343.13.

Description E-value Query
Range		 Subject
Range
GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens GN=gatB PE=3 ...
GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens (strain ATCC ...
 724.0 [0..5] [523..2]
GATB_GEOUR - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter uraniireducens (strain Rf4) ...
 722.0 [0..5] [523..2]
GATB_GEOMG - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter metallireducens (strain GS-1...
 721.0 [0..5] [523..2]
GATB_GEODF - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter daltonii (strain DSM 22248 /...
 718.0 [0..5] [523..2]
GATB_CARHZ - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Carboxydothermus hydrogenoformans (str...
 717.0 [0..3] [525..1]
GATB_HALHL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Halorhodospira halophila (strain DSM 2...
 713.0 [0..5] [523..2]
gi|88925125, gi|... - gi|88945252|ref|ZP_01148466.1| Glutamyl-tRNA(Gln) amidotransferase B subunit [Desulfotomaculum reduc...
 713.0 [0..3] [522..2]
GATB_PELCD - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Pelobacter carbinolicus (strain DSM 23...
 713.0 [0..3] [522..2]
GATB_MOOTA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Moorella thermoacetica (strain ATCC 39...
 711.0 [0..5] [522..2]
gi|98660243 - gi|98660243|dbj|GAA02418.1| unnamed protein product [Pelotomaculum thermopropionicum SI]
 711.0 [0..4] [522..18]

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Predicted Domain #1
Region A:
Residues: [1-526] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGRWAASI GLEIHLQLAT VKKLFSPAKV NPLAQPNTCV AYFDVSLPGS MPILNPEALK  60
   61 FAVKGALALN CEVANVCKFD RKHYFYPDLP AGYQITQKEI PIGRNGFIPL SAGLDNVPDT 120
  121 QIPIQHIQLE QDTAKSTSAK NPSRILLDYN RAGTPLLEIV TKPCFHDVNT VSAFLFKLQS 180
  181 IVRFAGISEA LMENGGMRCD VNVSIAPVIS SENLNELHFK NNGVISVEKS ISHFPQLGTQ 240
  241 LARVELKNLS NVRNVVNSIR HEVDRQVSLA NMGVSWPSET RGFDDITGKT FPLRNKTTSD 300
  301 DYLFLPETDI PPIILSRSYV NSVLKSLPAL PDELFQKLTT GSHAISHKEA RTLLSVKEYY 360
  361 HYYRNAYHHI DSISHVNQSL KEDALRTLPY WITVELVGKV REIDPSPNIN IVPPLQLADI 420
  421 VLLVSKKKLT AASAKLFLRS LIKSPSSKPI STLIQEKNFG TIGDSEKIKA CVESVLSKHS 480
  481 KQFEELKNGK TSLIKWFVGL TMRELRGQAS PKDIEMEVQS SLRREK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2df4B
Description: No description for 2df4B was found.

Predicted functions:

Term Confidence Notes
ligase activity 5.28014676041088 bayes_pls_golite062009
catalytic activity 1.08973967683802 bayes_pls_golite062009
binding 1.0468360119595 bayes_pls_golite062009
ammonia ligase activity 0.978763138251862 bayes_pls_golite062009
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 0.873485093374459 bayes_pls_golite062009
acid-ammonia (or amide) ligase activity 0.632807059205458 bayes_pls_golite062009
nucleic acid binding 0.545649763280687 bayes_pls_golite062009
protein binding 0.440356087696859 bayes_pls_golite062009
kinase activity 0.21984983699175 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.132389278472779 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.0373860162850559 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle