| Protein: | SPBC365.04c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 233 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC365.04c.
| Description | E-value | Query Range |
Subject Range |
|
|
165.0 | [0..1] | [226..106] |
|
|
164.0 | [0..1] | [226..131] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MSSKLSKKKL KSLEYRSKKF DKKSQSLEEH EKKVQQKNEE LEKKAADKIS RDELPEKQLA 60
61 QSNDKDKHSV SNPPHKTLKS KRQKGKNNDR KVILFVGNLP KDSSVETLQL HFKRAGQVPS 120
121 VRIPTDKTSG RQKGYAFVEF INPKTDVISK ALKFHHTIYK ERKINIELTA GG
|
| Detection Method: |  |
| Confidence: | 30.39794 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.72964573417386 | bayes_pls_golite062009 |
| binding | 3.0101982407193 | bayes_pls_golite062009 |
| nucleic acid binding | 2.34356093608328 | bayes_pls_golite062009 |
| 1.46562488829931 | bayes_pls_golite062009 | |
| structural molecule activity | 1.10982714865204 | bayes_pls_golite062009 |
| protein binding | 0.89093640300829 | bayes_pls_golite062009 |
| mRNA binding | 0.554135435832456 | bayes_pls_golite062009 |
|
Region A: Residues: [173-233] |
1 11 21 31 41 51
| | | | | |
1 GGKTEARMNK IKEKNRKWKE EMRQRVASEE QQAGEEKMAR KAVADEGLES GIHPDRLRLL 60
61 Q
|
| Detection Method: | |
| Confidence: | 16.154902 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.72964573417386 | bayes_pls_golite062009 |
| binding | 3.0101982407193 | bayes_pls_golite062009 |
| nucleic acid binding | 2.34356093608328 | bayes_pls_golite062009 |
| 1.46562488829931 | bayes_pls_golite062009 | |
| structural molecule activity | 1.10982714865204 | bayes_pls_golite062009 |
| protein binding | 0.89093640300829 | bayes_pls_golite062009 |
| mRNA binding | 0.554135435832456 | bayes_pls_golite062009 |
