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Protein Overview: SPBC365.04c

General Information:
Name(s) found: SPBC365.04c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 233 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLSKKKL KSLEYRSKKF DKKSQSLEEH EKKVQQKNEE LEKKAADKIS RDELPEKQLA  60
   61 QSNDKDKHSV SNPPHKTLKS KRQKGKNNDR KVILFVGNLP KDSSVETLQL HFKRAGQVPS 120
  121 VRIPTDKTSG RQKGYAFVEF INPKTDVISK ALKFHHTIYK ERKINIELTA GGGGKTEARM 180
  181 NKIKEKNRKW KEEMRQRVAS EEQQAGEEKM ARKAVADEGL ESGIHPDRLR LLQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..172] PSI-BLAST 30.39794 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [173..233] PSI-BLAST 16.154902 Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.72964573417386 bayes_pls_golite062009
  • binding
    		•  3.0101982407193 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.34356093608328 bayes_pls_golite062009
    		• 1.46562488829931 bayes_pls_golite062009
  • structural molecule activity
    		•  1.10982714865204 bayes_pls_golite062009
  • protein binding
    		•  0.89093640300829 bayes_pls_golite062009
  • mRNA binding
    		•  0.554135435832456 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  3.72964573417386 bayes_pls_golite062009
  • binding
    		•  3.0101982407193 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.34356093608328 bayes_pls_golite062009
    		• 1.46562488829931 bayes_pls_golite062009
  • structural molecule activity
    		•  1.10982714865204 bayes_pls_golite062009
  • protein binding
    		•  0.89093640300829 bayes_pls_golite062009
  • mRNA binding
    		•  0.554135435832456 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle