YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC70.06
Organism:	Schizosaccharomyces pombe
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC70.06.

Description	E-value	Query Range	Subject Range
gi\|19076040, gi\|... - gi\|7491965\|pir\|\|T41552 hypothetical protein SPCC70.06 - fission yeast (Schizosaccharomyces pombe), ...	430.0	[0..1]	[406..1]
SPCC576.05 - nucear export factor SAC31_SCHPO - SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1	423.0	[0..23]	[438..49]
SAC3_YEAST - Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC3 PE... SAC3 - Nuclear pore-associated protein, required for biogenesis of the small ribosomal subunit; forms a com... gi\|190404887 - gi\|190404887\|gb\|EDV08154.1\| leucine permease transcriptional regulator [Saccharomyces cerevisiae RM1...	415.0	[0..7]	[457..109]
gi\|46099410, gi\|... - gi\|71018843\|ref\|XP_759652.1\| hypothetical protein UM03505.1 [Ustilago maydis 521], ref\|XP_401120.1\| ...	403.0	[0..14]	[440..507]
orf19.1556 - orf19.1556 CGDID:CAL0005532 Assembly 19, Contig19-10119 (231238, 228515) CDS, reverse complemented, ... gi\|68466805, gi\|... - gi\|68466805\|ref\|XP_722598.1\| hypothetical protein CaO19.1556 [Candida albicans SC5314], gi\|46444585\|...	396.0	[0..16]	[441..146]
gi\|45200924, gi\|... - gi\|45200924\|ref\|NP_986494.1\| AGL173Wp [Ashbya gossypii ATCC 10895], gi\|44985694\|gb\|AAS54318.1\| AGL17... gi\|44985694 - gi\|44985694\|gb\|AAS54318.1\| AGL173Wp [Ashbya gossypii ATCC 10895]	396.0	[0..15]	[446..111]
gi\|109509943, gi... - gi\|149043694\|gb\|EDL97145.1\| minichromosome maintenance deficient 3 (S. cerevisiae) associated protei...	390.0	[0..40]	[435..598]
gi\|42554951, gi\|... - gi\|46125637\|ref\|XP_387372.1\| hypothetical protein FG07196.1 [Gibberella zeae PH-1], gi\|42554951\|gb\|E...	388.0	[0..6]	[432..169]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKVKQKQK QKHRPKPSLD RSDSTKRAAR AARFSTTLDA NFQALKKKRK DEQESFQAKQ  60
   61 STNWEKSSVL VGTCRQMCPE FELEERKLQH AIHPYELDPV SKQAHPSLAV KAYHRPAAGK 120
  121 GPILPSDVRP PSILKNTIDY LFKVILD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYSLREAHAF VRDRTRAVRQ DFSVQSSFSQ DSVYCHELIA RFHIISLHEL AHTPNFSRQQ  60
   61 EIEQLSKSME ILYTLGQLYD YMHLRKEHCT HEAEFRAYMV LLSLG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.862	N/A	N/A	a.24.9	alpha-catenin/vinculin

Predicted Domain #3

Region A:
Residues: [253-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPSVGLDTLS WPDFVFKKPI VKTSLKLYSL AQRNNHTITT SNSISLSLVS SFNTEATSNL  60
   61 YTRFFKIASS FRVSYLMGCL LDLFVPSIRT GALKAMKKCY LSAHSNIPFK DLMKILAATS 120
  121 EDELVQCCKM HGLKIEYIGE QPSAVVLNRK TVITEPLLSS EISCRFADEK KPGTNVSDLI 180
  181 CLDTDGSSLH RKKPKLFKKR SIVRQR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits