| Protein: | pcm1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 389 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pcm1.
| Description | E-value | Query Range |
Subject Range |
|
|
190.0 | [0..29] | [387..72] |
|
|
189.0 | [0..25] | [387..71] |
|
|
188.0 | [0..29] | [387..66] |
|
|
186.0 | [0..25] | [387..71] |
|
|
185.0 | [0..25] | [387..71] |
|
|
183.0 | [0..24] | [386..44] |
|
|
179.0 | [0..44] | [386..790] |
|
|
178.0 | [0..9] | [387..59] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MDSHHMMERS LTFERNYSHL FIIIFIIRDM SSSNSRVHEE QPPTENRRYA RPTAQMNRVI 60
61 EQQPRRRDYF QNNDNSGRRG YNRHENN
|
| Detection Method: |  |
| Confidence: | 12.69897 |
| Match: | 1qzzA |
| Description: | Crystal structure of aclacinomycin-10-hydroxylase (RdmB) in complex with S-adensyl-L-methionine (SAM) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [88-389] |
1 11 21 31 41 51
| | | | | |
1 GNAQDVVRSH YNARPDLGYK KRQFSPIIQL KRFNNWIKSV LIQKFAPHAS DYPILVLDMG 60
61 CGKGGDLIKW DKAGIDGYIG IDIAEVSVNQ AKKRYREMHA SFDALFYAGD CFSSSINELL 120
121 PPDQRKFDVV SLQFCMHYAF ESEEKVRVLL GNVSKCLPRG GVMIGTIPNS DVIVKHIKML 180
181 KPGEKEWGND IYKVRFPESP PRSFRPPYGI QYYFYLEDAV TDVPEYVVPF EAFRAVAEGY 240
241 NLELIWVKPF LDILNEEKNS ETYGPLMDRM KVVDNEGHRG IGGQEKEAAG FYLAFAFEKR 300
301 GI
|
| Detection Method: | |
| Confidence: | 36.0 |
| Match: | 1ri1A |
| Description: | Structure and mechanism of mRNA cap (guanine N-7) methyltransferase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| mRNA methyltransferase activity | 4.23788594273427 | bayes_pls_golite062009 |
| mRNA (guanine-N7-)-methyltransferase activity | 4.23788594273427 | bayes_pls_golite062009 |
| methyltransferase activity | 4.15445027778357 | bayes_pls_golite062009 |
| N-methyltransferase activity | 4.07806017452628 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 4.07153733729662 | bayes_pls_golite062009 |
| protein methyltransferase activity | 3.92746815303714 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 3.39429041855776 | bayes_pls_golite062009 |
| RNA methyltransferase activity | 3.07428840534971 | bayes_pls_golite062009 |
| histone methyltransferase activity | 2.99461585647365 | bayes_pls_golite062009 |
| transferase activity | 2.926540904444 | bayes_pls_golite062009 |
| arginine N-methyltransferase activity | 2.41876112831625 | bayes_pls_golite062009 |
| protein-arginine N-methyltransferase activity | 2.41876112831625 | bayes_pls_golite062009 |
| DNA-methyltransferase activity | 2.39581687084457 | bayes_pls_golite062009 |
| rRNA methyltransferase activity | 2.29640050660273 | bayes_pls_golite062009 |
| histone-arginine N-methyltransferase activity | 2.04296107639729 | bayes_pls_golite062009 |
| tRNA methyltransferase activity | 1.76571145896453 | bayes_pls_golite062009 |
| protein-arginine omega-N monomethyltransferase activity | 1.66871163498737 | bayes_pls_golite062009 |
| catalytic activity | 1.25333584501255 | bayes_pls_golite062009 |
| rRNA (uridine) methyltransferase activity | 1.22029787395194 | bayes_pls_golite062009 |
| histone methyltransferase activity (H4-R3 specific) | 1.1103522853299 | bayes_pls_golite062009 |
| RNA binding | 1.10729923226801 | bayes_pls_golite062009 |
| transcription regulator activity | 0.914549843668268 | bayes_pls_golite062009 |
| protein-arginine omega-N asymmetric methyltransferase activity | 0.89325812193225 | bayes_pls_golite062009 |
| DNA binding | 0.86027591375666 | bayes_pls_golite062009 |
| site-specific DNA-methyltransferase (adenine-specific) activity | 0.703178429468566 | bayes_pls_golite062009 |
| tRNA (cytosine)-methyltransferase activity | 0.672282175551951 | bayes_pls_golite062009 |
| tRNA (cytosine-5-)-methyltransferase activity | 0.672282175551951 | bayes_pls_golite062009 |
| nucleic acid binding | 0.616949327277483 | bayes_pls_golite062009 |
| rRNA (adenine) methyltransferase activity | 0.533090627724779 | bayes_pls_golite062009 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 0.455449410561251 | bayes_pls_golite062009 |
| binding | 0.383237930789959 | bayes_pls_golite062009 |
| protein-arginine omega-N symmetric methyltransferase activity | 0.364369105571521 | bayes_pls_golite062009 |
| tRNA (adenine)-methyltransferase activity | 0.31838575620236 | bayes_pls_golite062009 |
| tRNA (adenine-N1-)-methyltransferase activity | 0.31838575620236 | bayes_pls_golite062009 |
