YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC29A4.20
Organism:	Schizosaccharomyces pombe
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC29A4.20.

Description	E-value	Query Range	Subject Range
ELP3_CHICK - Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1	521.0	[0..5]	[544..9]
ELP3_XENLA - Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1	518.0	[0..5]	[544..12]
gi\|39941138, gi\|... - gi\|39941138\|ref\|XP_360106.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA54689....	518.0	[0..6]	[544..18]
ELP3_DANRE - Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3	516.0	[0..5]	[544..11]
gi\|68478719, gi\|... - gi\|68478719\|ref\|XP_716628.1\| hypothetical protein CaO19.7387 [Candida albicans SC5314], gi\|46438300\|... orf19.7387 - orf19.7387 CGDID:CAL0004812 Assembly 19, Contig19-2513 (108163, 109806) CDS, translated using codon ... gi\|238881003 - gi\|238881003\|gb\|EEQ44641.1\| hypothetical protein CAWG_02915 [Candida albicans WO-1]	515.0	[0..6]	[544..10]
gi\|32412484, gi\|... - gi\|7635787\|emb\|CAB88553.1\| probable histone acetyltransferase [Neurospora crassa], gi\|32412484\|ref\|X... gi\|85103762 - gi\|85103762\|ref\|XP_961595.1\| hypothetical protein NCU01229 [Neurospora crassa OR74A]	515.0	[0..2]	[544..16]
gi\|50310033, gi\|... - gi\|50310033\|ref\|XP_455030.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644165\|emb\|CAH0011... gi\|49644165 - gi\|49644165\|emb\|CAH00117.1\| KLLA0E23937p [Kluyveromyces lactis]	512.0	[0..6]	[544..18]
gi\|49528938 - gi\|49528938\|emb\|CAG62600.1\| unnamed protein product [Candida glabrata] gi\|50294426, gi\|... - gi\|50294426\|ref\|XP_449624.1\| hypothetical protein CAGL0M06369g [Candida glabrata CBS138], gi\|4952893...	511.0	[0..6]	[544..18]
gi\|49654841 - gi\|49654841\|emb\|CAG87345.1\| DEHA2D15884p [Debaryomyces hansenii] gi\|50421257, gi\|... - gi\|50421257\|ref\|XP_459174.1\| hypothetical protein DEHA0D17259g [Debaryomyces hansenii CBS767], gi\|49...	509.0	[0..6]	[544..17]
ELP3 - Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; exhi... ELP3_YEAST - Elongator complex protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELP3 PE=1 SV... gi\|190407869 - gi\|190407869\|gb\|EDV11134.1\| RNA polymerase II Elongator subunit [Saccharomyces cerevisiae RM11-1a] gi\|151942711 - gi\|151942711\|gb\|EDN61057.1\| RNA polymerase II Elongator subunit [Saccharomyces cerevisiae YJM789]	507.0	[0..6]	[544..18]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSSLAFLK AKACAEIVAE LIASENQNKV INLNALKMRI SKKHQLSESP RLTDIIAAIP  60
   61 PDAYLKESLM RKLRAKPVRT ASGIAVVAVM CKPHRCPHIA MTGNVCVYCP GGPDSDFEYS 120
  121 TQSYTGYEPT SMRAIRARYD PYEQARGRVE QLRSLGHTVD KVEYIIMGGT FMSLPESYRH 180
  181 TFIANLHNAL SGATTEDLDE AVKFSEQSET KCVGITIETR PDYCLDQHLD EMLRYGCTRL 240
  241 EIGVQSVYED VARDTNRGHT VKAVCETFQL AKDTGYKVVT HMMPDLPNVG MERDIFQFQE 300
  301 YFENPAFRTD GLKLYPTLVI RGTGLYELWK TGRYKNYTPN ALVDLIARIL ALVPPWTRIY 360
  361 RIQRDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.09691
Match:	1oltA
Description:	Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.62614606868017	bayes_pls_golite062009
catalytic activity	1.48331922124015	bayes_pls_golite062009
transferase activity	1.38870107531698	bayes_pls_golite062009
protein binding	0.374124957429525	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [367-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMPLVSSGVE TGNLRELALN RMRDLGTKCR DIRAREVGMQ EVHHKIHPEQ VELLRRDYTA  60
   61 NGGWETFLSY EDPKQDILIG LLRLRQCSDK TYRPEFTSQP TSLVRELHVY GSAVPVHSRD 120
  121 PKKFQHQGFG TLLLEEAERI AKYEHGSKKI SVISGVGVRK YYQKLGYTLD GPYMSKWL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.83
Match:	2q0yA
Description:	No description for 2q0yA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: