YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC18B5.10c
Organism:	Schizosaccharomyces pombe
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC18B5.10c.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	374.0	[0..1]	[309..1187]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	366.0	[0..1]	[309..1173]
HETE1_PODAS - Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1	363.0	[0..2]	[308..941]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	361.0	[0..1]	[309..1059]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	358.0	[0..1]	[308..794]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	354.0	[0..1]	[308..663]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCASVTESLP KFPELKTRDL QGQQGPIRSL GWNLSGSRLA SSSSSGSVLV WNSDRLDFKF  60
   61 TTELGNRGYG LVEQLVWDPT HSDRLMAVYA GKMIRFWDFR SAKPIAEIES NYENIYATWS 120
  121 PSGNYCCASS RDDMLSFIDA RERRIMETFQ QPCETNECCW SFSEDLFFMT TGLGTVQIME 180
  181 WPSLKRVYDI KAHNSNCFCI EFSPDNRHLA IGGADAITSL WDPQELICER SITRMDYPIR 240
  241 TLSFSYDSRY LASGSEDRYV DIADTKTGDQ IWKIPTNGPL NKVAWHPTKH ILAYAVSEPN 300
  301 SSGLKIFGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits