YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP8B7.05c
Organism:	Schizosaccharomyces pombe
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP8B7.05c.

Description	E-value	Query Range	Subject Range
gi\|45602064, gi\|... - gi\|45658819\|ref\|YP_002905.1\| sulfate permease [Leptospira interrogans serovar Copenhageni str. Fiocr... gi\|24194015, gi\|... - gi\|24213279\|ref\|NP_710760.1\| carbonic anhydrase [Leptospira interrogans serovar Lai str. 56601], gi\|...	257.0	[0..13]	[243..513]
gi\|54310267, gi\|... - gi\|54310267\|ref\|YP_131287.1\| putative carbonic anhydrase [Photobacterium profundum SS9], gi\|46914708...	257.0	[0..39]	[244..2]
gi\|46188217, gi\|... - gi\|66044114\|ref\|YP_233955.1\| carbonate dehydratase [Pseudomonas syringae pv. syringae B728a], gi\|632... tr\|F3GCL1\|F3GCL1... - Carbonic anhydrase OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_21557 PE=3 SV=1	257.0	[0..39]	[242..2]
gi\|68346848, gi\|... - gi\|70732549\|ref\|YP_262312.1\| carbonic anhydrase [Pseudomonas fluorescens Pf-5], gi\|68346848\|gb\|AAY94...	256.0	[0..39]	[242..2]
gi\|62320917 - gi\|62320917\|dbj\|BAD93915.1\| carbonic anhydrase, chloroplast precursor [Arabidopsis thaliana]	256.0	[0..3]	[237..12]
gi\|71557164, gi\|... - gi\|71736611\|ref\|YP_273166.1\| carbonic anhydrase [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71...	255.0	[0..39]	[242..2]
gi\|255055897, gi... - gi\|255055897\|ref\|ZP_05308122.1\| Carbonate dehydratase [Pectobacterium wasabiae WPP163], gi\|254988268... gi\|50122249, gi\|... - gi\|50122249\|ref\|YP_051416.1\| carbonic anhydrase [Pectobacterium atrosepticum SCRI1043], gi\|49612775\|...	255.0	[0..39]	[242..2]

Back

Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDRLKRRIE EIDHQDEIID REASTASPVS GAGKIDQNGE IKDLLERNLT WSQQTSRKYP  60
   61 SFFTATKDIQ TPQVLWIGCS DSRVPETTIL NLLPGEVFVH RNIANVVPRS DINALAVMEY 120
  121 SVTVLKVKHI IVCGHYGCGG VAAALGPNLN NLLDHWLRHI RDVIEDNREE LDAIEDPQLR 180
  181 RLKLAELNTR AQAISVTRVG FVREAMEKRG LQVHGWIYDL SNGQIKKLDI TDAIKKAKYG 240
  241 TYDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.221849
Match:	1ddzA
Description:	beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbonate dehydratase activity	2.96380803089124	bayes_pls_golite062009
catalytic activity	1.85658156053797	bayes_pls_golite062009
carbon-oxygen lyase activity	1.691366175135	bayes_pls_golite062009
hydro-lyase activity	1.65497918079842	bayes_pls_golite062009
lyase activity	1.62374861994341	bayes_pls_golite062009
binding	1.32962036184517	bayes_pls_golite062009
protein binding	0.132818074687599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: