| Protein: | SPAC139.03 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 625 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC139.03.
| Description | E-value | Query Range |
Subject Range |
|
|
224.0 | [0..15] | [624..63] |
|
|
210.0 | [0..2] | [585..14] |
|
|
209.0 | [0..11] | [622..57] |
|
|
205.0 | [0..6] | [613..47] |
|
|
204.0 | [0..6] | [622..54] |
|
|
203.0 | [0..5] | [623..35] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MSETTKSGSK KSGQTSRRAI HSCLACRRKK LKCDHGRPCS NCLKRSTIQS CIYIDPGKTN 60
61 YDKRFERGSE ADELIDQLLS RVSMLEKRLN EVGTKSQSDY ENQQSHNLPS TPSADAETQR 120
121 NIGSLSVLDD TKSQYANYSS SSHVLWHLRN
|
| Detection Method: |  |
| Confidence: | 4.39794 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [151-255] |
1 11 21 31 41 51
| | | | | |
1 YHYLNLDQDI QEENDSLISP FFFRISPNES AYDYLPPKKV SDILIEQFFF RCHMLINVLH 60
61 RPTFYVRYND FWEKPHLRKP AFTSLLYAIY ASALLATPVE VQKTW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [256-384] |
1 11 21 31 41 51
| | | | | |
1 ALGEDERYLQ VDYHQAFRYA LASSNFLFEP DLNALQALVL CQVVFDSDRI RAPPSLVGLI 60
61 LHVALCMGLH RDGSLYGLNP VISEIRRRVW ANIVLSDLRT SETIGYPPQI VEGNYDTRLP 120
121 SALPDEIHN
|
| Detection Method: | |
| Confidence: | 19.958607 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [385-625] |
1 11 21 31 41 51
| | | | | |
1 VDSSVIISEA TFVNIITKVS RAYSKCLKVL LGIIAPNYTR LLELDRELSN FFKELIEVNI 60
61 PTSNTMHERH IRLLVSYLSN RFPILLHFPF LLKKNSAQFA YSHSRALESA TLALNQLYEL 120
121 GSNPEYSKYS WYLWRYPPFH PCIVLLLDLL NSQKIIYLDD ERVVLLNKIF SLFPRSSGKE 180
181 HYQKAWALLQ TSRAKVWEKL GLSTVDVSTT DVRLTNFEFF DANNLDINWD DWDAIFQHCP 240
241 F
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
