YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC14C8.17c
Organism:	Schizosaccharomyces pombe
Length:	526 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC14C8.17c.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	444.0	[0..12]	[525..1202]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	426.0	[0..18]	[525..1080]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	425.0	[0..46]	[526..624]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	421.0	[0..50]	[522..1011]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	410.0	[0..49]	[525..178]

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Predicted Domain #1

Region A:
Residues: [1-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEESESFS YPMLLPSDGL YPEDDDDADM DQDKNPEENV MNEKEDEDVD AVDEKSGEED  60
   61 VEMDTMEDEN ENDEDTEQTS EKKETEETPK ENPLEKLKQK ASTASFYDVV PTLAIPMATS 120
  121 INAFAFTSDL KWLFTGGEDG YIRKYDFFPS INGDLSLTVA QRHPFVDTVT KAGILLNYWE 180
  181 NAYDGNKPSS VYSLAAHSRG LWVLSGVNNG DIILYSTRHQ EGYPVTSLKK HTAPVSCLAL 240
  241 HGSEKKVLSG SWDKMVYYWD LNTGDAISTY NCESGQISNI VYRPSGAVNP WGSESDDMRS 300
  301 LFGTPASSSS YDALFDEEVE KAIEEETKSV QANEENETEK PSQTESTTNN DNIKAPSESS 360
  361 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	2pm9A
Description:	No description for 2pm9A was found.

Predicted Domain #2

Region A:
Residues: [362-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EESNIFLTTS IDGVMNVWDH RMVDSVLKYP VPKGVPPWAM SACWSPDGNN IYIGRRNGIV  60
   61 EEYNIHSGKE PVRSLKM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.30103
Match:	2oajA
Description:	No description for 2oajA was found.

Predicted Domain #3

Region A:
Residues: [439-526]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLDSGPVSNV YSMPNGRHLV ISSFDNIRLY DLQSKAGIGF LIIPGHHGGL VSSLYVDTSC  60
   61 QFMFSASGNR GWQGTTTEVF LGYQIMTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits