YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC922.03
Organism:	Schizosaccharomyces pombe
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC922.03.

Description	E-value	Query Range	Subject Range
1A1D_BURL3 - 1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NC... 1A1D_BURS3 - 1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia sp. (strain 383) GN=acdS PE=3 SV=1	283.0	[0..1]	[337..1]
1A1D_BURCM - 1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) G...	282.0	[0..1]	[337..1]
gi\|254249233, gi... - gi\|84353726\|ref\|ZP_00978652.1\| COG2515: 1-aminocyclopropane-1-carboxylate deaminase [Burkholderia ce...	281.0	[0..1]	[337..1]
1A1D_BURVG - 1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN...	281.0	[0..1]	[337..1]
1A1D_BURCH - 1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cenocepacia (strain HI2424) GN=acdS PE=3... 1A1D_BURCA - 1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cenocepacia (strain AU 1054) GN=acdS PE=...	279.0	[0..1]	[337..1]
1A1D_BURXL - 1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia xenovorans (strain LB400) GN=acdS PE=3 S...	279.0	[0..1]	[337..1]
gi\|75910354, gi\|... - gi\|75910354\|ref\|YP_324650.1\| cystathionine beta-synthase [Anabaena variabilis ATCC 29413], gi\|757040...	276.0	[0..3]	[336..1]
1A1D_PSEUD - 1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas sp. (strain ACP) GN=acdS PE=1 SV=1 gi\|150963, gi\|56... - gi\|56554087\|pdb\|1TZM\|D Chain D, Crystal Structure Of Acc Deaminase Complexed With Substrate Analog B...	275.0	[0..1]	[337..1]
gi\|9230747 - gi\|9230747\|gb\|AAF85968.1\| ACC deaminase [synthetic construct]	274.0	[0..1]	[337..1]
gi\|220759, gi\|69... - gi\|6978611\|ref\|NP_036654.1\| cystathionine beta synthase [Rattus norvegicus], gi\|220759\|dbj\|BAA00883....	273.0	[0..4]	[336..72]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEQFKKYP LTFGPTPITS MKRLSKTLGG KVEIFAKRED CNSGLAFGGN KIRKLEYLIP  60
   61 EAIDGGYDTL VSIGGIQSNQ TRQVAAVAAH LGLDCVLIQE DWVDYKDTMY DRVGNIELSR 120
  121 IVNADVRLDS SKFDIGIRPS FKNALEELTK KGKKPFPIPA GCSEHPYGGL GFVGCVEEIY 180
  181 EQEKQLGFKF DKIVVCTVTG SSFAGIIVGM ALTGRQKDVI GIDASATPEK TKAQVLRIAQ 240
  241 NTAKLIGLEK ELTESDVNID TRFAHPAYGI PNEGTIEAIK LCGATEGVLT DPVYEGKSMQ 300
  301 GLIHLVRNNE IAEGSKVLYI HLGGAPALSA YSAYFKNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	1rqxA
Description:	Crystal structure of ACC Deaminase complexed with Inhibitor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cysteine synthase activity	4.72413272579429	bayes_pls_golite062009
catalytic activity	2.38994231321972	bayes_pls_golite062009
1-aminocyclopropane-1-carboxylate deaminase activity	2.36589679524219	bayes_pls_golite062009
tryptophan synthase activity	1.99526226543975	bayes_pls_golite062009
lyase activity	1.87743897464083	bayes_pls_golite062009
cystathionine beta-synthase activity	1.4517088142802	bayes_pls_golite062009
carbon-oxygen lyase activity	0.923824749425553	bayes_pls_golite062009
binding	0.791501201936306	bayes_pls_golite062009
ammonia-lyase activity	0.476674617721478	bayes_pls_golite062009
L-threonine ammonia-lyase activity	0.37325071016009	bayes_pls_golite062009
carbon-nitrogen lyase activity	0.249761226675912	bayes_pls_golite062009
threonine synthase activity	0.0538811973418393	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: