YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17A2.05
Organism:	Schizosaccharomyces pombe
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17A2.05.

Description	E-value	Query Range	Subject Range
gi\|90300343, gi\|... - gi\|90300343\|gb\|EAS29974.1\| hypothetical protein CIMG_08720 [Coccidioides immitis RS], gi\|119180100\|r...	296.0	[0..41]	[513..7]
gi\|71082948, gi\|... - gi\|71082948\|ref\|YP_265667.1\| succinate dehydrogenase flavoprotein subunit [Candidatus Pelagibacter u...	287.0	[0..36]	[513..8]
gi\|169603405, gi... - gi\|169603405\|ref\|XP_001795124.1\| hypothetical protein SNOG_04712 [Phaeosphaeria nodorum SN15], gi\|11...	286.0	[0..41]	[511..5]
gi\|91718430, gi\|... - gi\|91762628\|ref\|ZP_01264593.1\| succinate dehydrogenase [Candidatus Pelagibacter ubique HTCC1002], gi...	286.0	[0..36]	[511..8]
gi\|32422671, gi\|... - gi\|38567126\|emb\|CAE76421.1\| related to fumarate reductase [Neurospora crassa], gi\|32422671\|ref\|XP_33... gi\|85119766 - gi\|85119766\|ref\|XP_965711.1\| hypothetical protein NCU02580 [Neurospora crassa OR74A]	286.0	[0..41]	[511..5]
gi\|42553241, gi\|... - gi\|46135637\|ref\|XP_389517.1\| hypothetical protein FG09341.1 [Gibberella zeae PH-1], gi\|42553241\|gb\|E...	286.0	[0..41]	[512..5]
gi\|29377044, gi\|... - gi\|29377044\|ref\|NP_816198.1\| fumarate reductase flavoprotein subunit [Enterococcus faecalis V583], g... gi\|229305554, gi... - gi\|229549317\|ref\|ZP_04438042.1\| succinate dehydrogenase [Enterococcus faecalis ATCC 29200], gi\|22930... gi\|229309966, gi... - gi\|229545074\|ref\|ZP_04433799.1\| succinate dehydrogenase [Enterococcus faecalis TX1332], gi\|229309966... gi\|227176802, gi... - gi\|227554054\|ref\|ZP_03984101.1\| succinate dehydrogenase [Enterococcus faecalis HH22], gi\|227176802\|g... gi\|238857277, gi... - gi\|238857277\|ref\|ZP_04647527.1\| fumarate reductase flavoprotein subunit [Enterococcus faecalis TUSoD...	285.0	[0..21]	[503..41]
gi\|59803125 - gi\|59803125\|gb\|AAX07713.1\| FAD-dependent oxidoreductase-like protein [Magnaporthe grisea] gi\|145009796, gi... - gi\|39943078\|ref\|XP_361076.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA52024....	285.0	[0..41]	[511..5]
gi\|49068996, gi\|... - gi\|71005306\|ref\|XP_757319.1\| hypothetical protein UM01172.1 [Ustilago maydis 521], ref\|XP_398787.1\| ...	284.0	[0..13]	[513..41]
gi\|88185681, gi\|... - gi\|88185681\|gb\|EAQ93149.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11618...	283.0	[0..41]	[511..5]

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Predicted Domain #1

Region A:
Residues: [1-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCLTIYTWT FRRLPFIPST NSASFFSTLR FNMSTANNTQ AIVIGGGLAG LSATNTILDL  60
   61 GGNVLLLDKN TAFGGNSVKA ASGINAAPTQ LQFDQHVSDS VNTFYNDSIL SAKSKAKPEL 120
  121 LRTLTSKSSS AVDWLSERFG LQMDQLSRLA GHSEPRTHRG THPDYPFKPL AFVLVDQTEK 180
  181 FAASHPDRLQ IKKNARVTRL LTNPNHDKVF GVEYMDLSDK SNHTVYGPVV LATGGYAADY 240
  241 SDDSLLKLYH PEALSLSTTN GPYCTGDGHK MVMSIGGSTV DLDLVQIHPT GFVDPKDPTA 300
  301 LTKFLAAEAL RGSGAVLLTS QGRRFCDELG YRDYVTGEMM KLKSPVYLVL NSAAAEEVAN 360
  361 FIKFYSFKGL MKKMKAEELC STLNCTKDEL ASTFSEYNRA AKGEIPDEFG RKYFGKTPLE 420
  421 LTDTFTVGEV VPVLHYTMGG VQVDTQSRVL STNGNVIDGL FAAGEIVGGI HGENRLGGSS 480
  481 LLACVVFGRL AGQGASSTML RRFIASSTST ASS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1qo8A
Description:	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain; Flavocytochrome c3 (respiratory fumarate reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	5.00880700655468	bayes_pls_golite062009
succinate dehydrogenase activity	4.85506290418994	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	3.70791057697947	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	3.70791057697947	bayes_pls_golite062009
oxidoreductase activity	3.25470541847124	bayes_pls_golite062009
electron carrier activity	2.8553929424231	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	2.84060092432585	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.78793325009909	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.11247286526577	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
catalytic activity	1.75556359035561	bayes_pls_golite062009
binding	1.41440014472974	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.798505263716232	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	0.71497408952162	bayes_pls_golite062009
fumarate reductase (NADH) activity	0.65260793370113	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
coenzyme binding	0.44036421821989	bayes_pls_golite062009
protein binding	0.159209309982354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: