YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1604.04
Organism:	Schizosaccharomyces pombe
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1604.04.

Description	E-value	Query Range	Subject Range
gi\|151942810 - gi\|151942810\|gb\|EDN61156.1\| amino acid transporter [Saccharomyces cerevisiae YJM789] AGC1 - Mitochondrial amino acid transporter, acts both as a glutamate uniporter and as an aspartate-glutama... AGC1_YEAST - Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	267.0	[0..17]	[284..531]
gi\|33598954 - gi\|33598954\|ref\|NP_037518.2\| solute carrier family 25 member 24 isoform 1 [Homo sapiens]	266.0	[0..8]	[275..186]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	265.0	[0..8]	[275..167]
gi\|74006830 - gi\|74006830\|ref\|XP_537947.2\| PREDICTED: similar to ADP/ATP translocase 3 (Adenine nucleotide translo...	265.0	[0..11]	[275..175]
gi\|215701397, gi... - gi\|51090928\|dbj\|BAD35532.1\| putative small calcium-binding mitochondrial carrier 2 [Oryza sativa Jap...	264.0	[0..11]	[275..227]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLAKQKDSQ EFAQPVWHYT LAGGISSVIC RFMIAPFDVI KIRMQITQSS LRPVFKETVQ  60
   61 KEGVRALWRG NVVAELLYLV YGAAEFVAFS KLKHLTENLA MNDHAVNFLC GTSAGIFATL 120
  121 TSYPLDTMRT KFASYAKTPH MLPATKKIYA EAGIKGFFPG LKFSVIQIGP YAGCFFMFYR 180
  181 ASEAVLSPLG LALSSTLSGV IAGAGSKAIM FPVDTVVKTL QTFPSNYKSF KDCFLSIYRN 240
  241 SGIKGLYRGL SVSMLKVAPG RYECLWLSCH FYYSIIYLLN SMFYLLTFYS LRAITMLIYE 300
  301 QTLQGLRTLS SPEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.69897
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits