YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2E1P5.05
Organism:	Schizosaccharomyces pombe
Length:	524 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2E1P5.05.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	400.0	[0..29]	[523..1153]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	393.0	[0..51]	[524..568]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	391.0	[0..51]	[524..993]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	385.0	[0..16]	[524..1095]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	375.0	[0..43]	[523..948]

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Predicted Domain #1

Region A:
Residues: [1-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPFFTRPE HRKRKARSAT SKREKENQKL ERNGPANEDL ASISSESEFN GFEDEIDEEN  60
   61 EDTYETAAEK RLRLAREYLD EVKNELVEDG GFDAKEVDRE LLASRLKEDV LEKKGQMYLD 120
  121 YTSKINPDVK IETAQLRGRH MRPLVGVVAY ENFVYSADKS GLIQKWEALQ EKDTENREND 180
  181 DHEIGKAIKL HFRPIKFSRS RRGENDHVKE ITCLAISNDG RWIVTGGLDH RIVIRDSVTL 240
  241 EPQHCWKHHR DAVMGLAMRR GTNEMFSCSA DRSIKVWSLD QMSYIETLFG HQDVIFGVDA 300
  301 LARERCVSVG GRDRTSRLWK IVEESQLVFR SGGTSMKATA GYMEGSVDCV AMIDEDHFVT 360
  361 GSDNGVIALW SVQRKKPLFT YPLAHGLDPI LAPGRHSAET SPDPVTIPPQ PRWITSLAAI 420
  421 PYSNLFASGS WDGNIRLWKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1r5mA
Description:	Crystal Structure Of The C-Terminal WD40 Domain Of Sif2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [441-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEGLRSFEPL TIATPLSVYG CINSLSLSLQ GKGKQSEVRV FAACGRETRV GRWKTLRGIP  60
   61 NSGFVFNIPL TVIPSVTDGD EIDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits