| Protein: | gde1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1076 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gde1.
| Description | E-value | Query Range |
Subject Range |
|
|
601.0 | [0..2] | [909..206] |
|
|
583.0 | [0..24] | [930..1] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MLENDLQKVV NLFNTRIVQL DNYVTRLSTE KSPNTEITQA LSSSYEAEEK AKQLKELDFR 60
61 LQQLSSFCEW NKLAFEKLAA NMDKHLGTER LVTFYEQKVC KLDFANSSKI YESMIALKAL 120
121 NSSQNDSEVK DKLEKL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [137-255] |
1 11 21 31 41 51
| | | | | |
1 SIHHPLKKDL LAFIQLDIAA EVVTACINAP DSVLVDILAA SIIAGAKACM REVIGRIGLR 60
61 SECLASALRR AINNLCGPDE GVLYFLEVLK QICSVVYVDS YHSNRLLSRI LLVERNSKG
|
| Detection Method: | |
| Confidence: | 38.0 |
| Match: | 2f8xK |
| Description: | No description for 2f8xK was found. |
|
Region A: Residues: [256-658] |
1 11 21 31 41 51
| | | | | |
1 QSVMHSVAKL GWAGLCSKFC EIVSSIPDSE PLNWMLPCWR DVMHDTPLTL AIKGNHVEAL 60
61 HALLSAQDKE TTSTKPGPVP PLVLTCCVGD YDLIVEELIL AGFNPNEVDA SSNTALHTAV 120
121 RYNRPECVKM LLKLGANPSA RDFLNSWTPL MLASATGLSE IVSILVASGA SVDEVDSSGW 180
181 TAMEQAVVRG YLHLADKLRT QVALSDKPVN LHTLYIKASS SEMRSRKRAM DLQLSRSVVI 240
241 IRISDLAGRI RVSLQGDDAV YVSGRSPSFA ASRPSSVDFM SQSTDSLSKN DTTASNGSMT 300
301 PSSSQNNSVI IDIPRSHFDN AGEVCLENLA EPDEIADDSI HLHYDAAQEN SPQPVNGSSP 360
361 PYELVFVTRN TEEATITIDL LANRSHKILG RTVCCLTSLV SDL
|
| Detection Method: | |
| Confidence: | 84.69897 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.819335581329918 | bayes_pls_golite062009 |
| protein binding | 0.710332507917693 | bayes_pls_golite062009 |
| calcium-independent phospholipase A2 activity | 0.621306773219824 | bayes_pls_golite062009 |
|
Region A: Residues: [659-727] |
1 11 21 31 41 51
| | | | | |
1 GNHMQSLKPL APLPLLSSKT LKPIAHVNAD VLISKVTVDD RFSSNDGIST PALSLEAVSN 60
61 VSRTALEDA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.248 | b.43.4 | Riboflavin synthase domain-like |
| View | Download | 0.666 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.433 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.234 | a.4.12 | TrpR-like |
| View | Download | 0.212 | d.58.18 | Regulatory domain in the aminoacid metabolism |
|
Region A: Residues: [728-1076] |
1 11 21 31 41 51
| | | | | |
1 ERSLHKSATT TSESGKSNGV AVIGHRGLGK NQPDRLSLQL GENTLQSFIK AADLGASYVE 60
61 LDVQMTKDMV PVVYHDFIVN ETGTDAQVHS LTLEQFLGAS HSPSEEIKDD ASDIQQKRRP 120
121 RAYSSSFTPS GSQVNFGEFA EENARLKPKV YKGNALGHTI CAPFTTLKDV LKEVPQSVGL 180
181 NVEFKYPMLS EAEEEKLLPI AYDYNFYVDT ILSIIKKYGG KRKYIFSSFN PDICILLSLK 240
241 STNPVLFLTE GGTAYRTDVR AASLRQALKF ASQWSFLGIV SACEPLIMCP RLIKAVKQLG 300
301 LSCYTYGVLN NDVDNVRRQV RFGVDAVIVD NVLAIRRALN QYDESLESD
|
| Detection Method: | |
| Confidence: | 52.39794 |
| Match: | 1t8qA |
| Description: | Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| glycerophosphodiester phosphodiesterase activity | 4.27697417361287 | bayes_pls_golite062009 |
| phosphoric diester hydrolase activity | 3.6633363681844 | bayes_pls_golite062009 |
| phospholipase activity | 3.3535603060637 | bayes_pls_golite062009 |
| phosphoric ester hydrolase activity | 3.27299307330343 | bayes_pls_golite062009 |
| phospholipase C activity | 2.81479108775786 | bayes_pls_golite062009 |
| inositol or phosphatidylinositol phosphodiesterase activity | 2.13368269358874 | bayes_pls_golite062009 |
| phosphoinositide phospholipase C activity | 2.13368269358874 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.48964499825589 | bayes_pls_golite062009 |
| hydrolase activity | 1.41001330359992 | bayes_pls_golite062009 |
| lipase activity | 1.30779031242608 | bayes_pls_golite062009 |
| phosphatidylglycerol phospholipase C activity | 1.28645679518658 | bayes_pls_golite062009 |
| catalytic activity | 1.22328099675039 | bayes_pls_golite062009 |
