YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4F8.04
Organism:	Schizosaccharomyces pombe
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4F8.04.

Description	E-value	Query Range	Subject Range
gi\|50751392 - gi\|50751392\|ref\|XP_422376.1\| PREDICTED: similar to RNA processing factor 1 [Gallus gallus]	309.0	[0..2]	[306..272]
IMP4_YARLI - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1 IMP4_YARLI - U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) G...	293.0	[0..1]	[306..1]
gi\|110645366, gi... - gi\|89272523\|emb\|CAJ83459.1\| brix domain containing 5 [Xenopus tropicalis], gi\|110645366\|gb\|AAI18765....	292.0	[0..1]	[306..47]
gi\|62644541, gi\|... - gi\|62644541\|ref\|XP_575059.1\| PREDICTED: similar to Ribosome production factor 1 (Ribosome biogenesis...	291.0	[0..1]	[306..72]
gi\|109008739, gi... - gi\|109008739\|ref\|XP_001106723.1\| PREDICTED: similar to RNA processing factor 1 isoform 3 [Macaca mul...	290.0	[0..1]	[306..54]
RPF1 - ribosome production factor 1 homolog (S. cerevisiae) gi\|114557449 - gi\|114557449\|ref\|XP_524755.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	289.0	[0..1]	[306..54]
gi\|7268199, gi\|5... - gi\|7268199\|emb\|CAB77726.1\| hypothetical protein [Arabidopsis thaliana], gi\|58652114\|gb\|AAW80882.1\| A...	288.0	[0..2]	[306..37]
gi\|49643437 - gi\|49643437\|emb\|CAG99389.1\| KLLA0E07833p [Kluyveromyces lactis] gi\|49643437, gi\|... - gi\|50308599\|ref\|XP_454302.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643437\|emb\|CAG9938...	288.0	[0..1]	[306..1]
gi\|57088279 - gi\|57088279\|ref\|XP_537096.1\| PREDICTED: similar to RNA processing factor 1 [Canis familiaris]	288.0	[0..1]	[306..54]

Back

Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIKNKIVR QQQYMKALHQ KNKDKLERRK ERAKEEEKDP EKKRLRLSEN IPATIESKRV  60
   61 YDETIIEDKP DEELQAELKD DEFSAYFSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERKVPKLLVT TSKRASRKCY DFASELLDCF PNAEFRKRTG DIEVHEIAEA AAKRGYTDLL  60
   61 VLNEDRKKTN ALTLVHLPNG PSFYFTLSNL QTAKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.045757
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aminoacyl-tRNA ligase activity	3.58650371779212	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	3.58624422951947	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.58624422951947	bayes_pls_golite062009
ligase activity	2.44518871945794	bayes_pls_golite062009
proline-tRNA ligase activity	2.35871952544841	bayes_pls_golite062009
binding	1.78917266819015	bayes_pls_golite062009
catalytic activity	0.902495165806215	bayes_pls_golite062009
protein binding	0.665778090365515	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [185-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISNHGRSTGH IPELIINNFS TRLGMTVARA FQSLFIQTPQ IQGRQVVTIH CQRDFLFFRR  60
   61 HRYAFREKSN MPDGIGTGLQ ELGPRFTMRL RMVQKGVWDR KEGEVFFESN AGEESDRRKF 120
  121 WL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.82
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: