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Protein Overview: SPAC4F8.04

General Information:
Name(s) found: SPAC4F8.04 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • Brix domain protein Rpf1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [ISSLink to PubMed article]
    ribosome biogenesis [ISSLink to PubMed article]
    ribosomal large subunit assembly [ISSLink to PubMed article]
    maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    rRNA primary transcript binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIKNKIVR QQQYMKALHQ KNKDKLERRK ERAKEEEKDP EKKRLRLSEN IPATIESKRV  60
   61 YDETIIEDKP DEELQAELKD DEFSAYFSEE RKVPKLLVTT SKRASRKCYD FASELLDCFP 120
  121 NAEFRKRTGD IEVHEIAEAA AKRGYTDLLV LNEDRKKTNA LTLVHLPNGP SFYFTLSNLQ 180
  181 TAKEISNHGR STGHIPELII NNFSTRLGMT VARAFQSLFI QTPQIQGRQV VTIHCQRDFL 240
  241 FFRRHRYAFR EKSNMPDGIG TGLQELGPRF TMRLRMVQKG VWDRKEGEVF FESNAGEESD 300
  301 RRKFWL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] MSA 2.132993 View MSA. No confident structure predictions are available.
    2 View Details [90..184] PSI-BLAST 14.045757 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    3 View Details [185..306] FFAS03 1.82 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.58650371779212 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity
    		•  2.44518871945794 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.78917266819015 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.665778090365515 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle