| Protein: | SPAC4G9.04c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 638 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4G9.04c.
| Description | E-value | Query Range |
Subject Range |
|
|
402.0 | [0..2] | [602..8] |
|
|
380.0 | [0..2] | [588..5] |
|
|
377.0 | [0..2] | [575..6] |
|
|
377.0 | [0..3] | [537..7] |
|
|
374.0 | [0..2] | [602..8] |
|
|
374.0 | [0..2] | [603..8] |
|
|
356.0 | [0..2] | [602..8] |
|
|
346.0 | [0..4] | [559..10] |
|
|
340.0 | [0..2] | [602..7] |
|
|
336.0 | [0..155] | [630..303] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MDLVELDYLS ALEDLTFNSK PIIHTLTYIA QENEPYAISI VNAIEKHIQK CPPNCKLPAL 60
61 YLLDSISKNL GAPYTYFFGL HLFSTFMSAY TVVEPRLRLK LDQLLATWKQ RPPNSSSLEP 120
121 VFSPIVTAKI ENAL
|
| Detection Method: |  |
| Confidence: | 43.39794 |
| Match: | 1sz9A |
| Description: | The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.44539235794744 | bayes_pls_golite062009 |
| transcription regulator activity | 2.34092044533955 | bayes_pls_golite062009 |
| protein binding | 1.97365365208963 | bayes_pls_golite062009 |
| nucleic acid binding | 1.74252996786746 | bayes_pls_golite062009 |
| DNA binding | 1.73786982174918 | bayes_pls_golite062009 |
| transcription factor activity | 1.0565013251721 | bayes_pls_golite062009 |
| clathrin binding | 0.196939581490181 | bayes_pls_golite062009 |
|
Region A: Residues: [135-299] |
1 11 21 31 41 51
| | | | | |
1 LKYKSTILRH QSPLLANTSI SSFSAPIDAN INSYSSFSDP ASSYKPSLPS VPFGFQHISG 60
61 TSPSPGFITL DSLLSDVNRM IVTEQARFIK NPYDNMAKKR FEILLQLKNV LSSSALPYDQ 120
121 LLAIKNQLAQ LEKPASPSTS SVATSAPSVP SALSSISSTP FMKPS
|
| Detection Method: | |
| Confidence: | 3.045757 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [300-402] |
1 11 21 31 41 51
| | | | | |
1 IPSTIPTIPS AYSASVSSQP PLTHSYVHPG PQSHKYSLSS GPPASLYNAN ALTPEESSSI 60
61 DSLFANLQAA GLVPPSAGGK SQGPQASCTE AVSLTADIDL SKS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [403-566] |
1 11 21 31 41 51
| | | | | |
1 SLATPRPKLS SLLYENYSNQ CANCGRRYGN DPESRKELDK HSDWHFRINK RIRESSLHGI 60
61 NRCWFVMEEE WVNSKEEEDL ITETAQEIEE QRQKQMESVR SQYVLTPLDP IAASEPCPIC 120
121 QEKFQSVWHE EAEVWVFMNA VEEEGRIFHA TCLQEVRPSE NKHS
|
| Detection Method: | |
| Confidence: | 2.1 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [567-638] |
1 11 21 31 41 51
| | | | | |
1 NTNTSTQNLA EAAVSSNIKN ATGDASKDSQ PDVQNLLQGI DIQSILQALG KRKERDDSMD 60
61 SMSSKVIKQE SK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
