YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC25H2.03
Organism:	Schizosaccharomyces pombe
Length:	811 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC25H2.03.

Description	E-value	Query Range	Subject Range
gi\|49096408, gi\|... - gi\|67538714\|ref\|XP_663131.1\| hypothetical protein AN5527.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	518.0	[0..20]	[796..886]
gi\|27803035, gi\|... - gi\|27803035\|emb\|CAD60738.1\| unnamed protein product [Podospora anserina], gi\|188219278\|emb\|CAP49258.... gi\|189091850 - gi\|189091850\|ref\|XP_001929758.1\| [Podospora anserina]	512.0	[0..1]	[762..1]
gi\|46136661, gi\|... - gi\|46136661\|ref\|XP_390022.1\| hypothetical protein FG09846.1 [Gibberella zeae PH-1], gi\|42554865\|gb\|E...	490.0	[0..1]	[792..1]
gi\|70992637, gi\|... - gi\|70992637\|ref\|XP_751167.1\| vacuole-associated enzyme activator complex component (Vac14), putative...	488.0	[0..1]	[760..1]
gi\|44983634 - gi\|44983634\|gb\|AAS52733.1\| AER049Wp [Ashbya gossypii ATCC 10895] gi\|44983634, gi\|... - gi\|45190655\|ref\|NP_984909.1\| AER049Wp [Ashbya gossypii ATCC 10895], gi\|44983634\|gb\|AAS52733.1\| AER04...	476.0	[0..1]	[791..1]
gi\|111068654, gi... - gi\|169600419\|ref\|XP_001793632.1\| hypothetical protein SNOG_03043 [Phaeosphaeria nodorum SN15], gi\|11...	471.0	[0..1]	[760..1]
gi\|73957055 - gi\|73957055\|ref\|XP_546837.2\| PREDICTED: similar to Vac14 homolog isoform 1 [Canis familiaris]	467.0	[0..1]	[756..10]
gi\|83767451 - gi\|83767451\|dbj\|BAE57590.1\| unnamed protein product [Aspergillus oryzae] gi\|169770245 - gi\|169770245\|ref\|XP_001819592.1\| hypothetical protein [Aspergillus oryzae RIB40]	458.0	[0..1]	[740..1]
VAC14 - Protein involved in regulated synthesis of PtdIns(3,5)P(2), in control of trafficking of some protei... VAC14_YEAST - Vacuole morphology and inheritance protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...	448.0	[0..1]	[744..1]
VAC14_XENLA - Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1	443.0	[0..1]	[754..10]

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Predicted Domain #1

Region A:
Residues: [1-579]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLLVRGLT HKLYDKRKAT AYELERVVKG YLENDETEKI RAVISQLAND FVYSPARGPN  60
   61 ATFGGLIGLA AVAIALGPKI DSYMESILLP VLYCFNDSDS KIRYYACESM YNIGKVAKGE 120
  121 VFRYFNLIFD VLCKLFADTE ITVKNGAELL DRLIKDIVMQ QAATYMSSAE DIKNFKEGPV 180
  181 SSSIQDVPVM STEQPRMHTF SLSELVPLLS ERLYVINPNT RMFLVSWIRL LDSIPDLEFI 240
  241 SYLPFLLDGL MNYLSDPNES IRIVTSNCLY DFLREIQKIA KVKYHILQRD EESEPDFFDS 300
  301 MVRRNMSDAE LKEISDYVES SLRDGSFILE AHIQIDYKRI LEIIIDHLGS SVPLIQEKAL 360
  361 KWLFEFIYIA PKDVLLQIPK VLENLLPLMS NDENMRQSAK DLSQNLVILV SKIMDIEFSG 420
  421 SETNNKDNSL SVDFRSLIEV LQKLLSNDNE ETRLCALEWV LLLQRRTGGK LINMHDPIFQ 480
  481 TLLLQLSDPS DLVVSRTLEL LAHIAISHKS VNLVPFLKSL LQMFAEDRKF LNSRGNLIIR 540
  541 QLCNYIEGER VYTSFAGILE TEENLELASI MVEVLNNNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.39794
Match:	2h4mA
Description:	No description for 2h4mA was found.

Predicted Domain #2

Region A:
Residues: [580-672]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTAPELYDLR KKLKQSAPKL QNIFTTLYTA WCHNSIAVFS LCLLSQNYEH AANLLSVFAE  60
   61 IEFNIDMLIQ LDKLVQLIES PVFTYMRLQL LEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1u6gC
Description:	Crystal Structure of The Cand1-Cul1-Roc1 Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [673-811]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKYPYLHKAL YGILMLLPQS SAFRTLRDRL QCSSTPRTNT ILANERLPRS RRDDPYWTDL  60
   61 LERLKAVQLS HQNNYREPIR ATRLALAGAL PSTPTATTIS TTTSASGITT TASNSRDSFI 120
  121 TRLPPTAALS TGARKKPKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits