YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4H3.03c
Organism:	Schizosaccharomyces pombe
Length:	649 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4H3.03c.

Description	E-value	Query Range	Subject Range
gi\|28926756, gi\|... - gi\|32420181\|ref\|XP_330534.1\| hypothetical protein [Neurospora crassa], gi\|28926756\|gb\|EAA35721.1\| hy... gi\|85115930 - gi\|85115930\|ref\|XP_964957.1\| hypothetical protein NCU03098 [Neurospora crassa OR74A]	612.0	[0..5]	[642..12]
gi\|88185137, gi\|... - gi\|88185137\|gb\|EAQ92605.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11618...	606.0	[0..6]	[642..12]
gi\|38109801, gi\|... - gi\|39950962\|ref\|XP_363338.1\| hypothetical protein MGG_01264 [Magnaporthe grisea 70-15], gb\|EAA55613....	601.0	[0..7]	[642..15]
gi\|83724077, gi\|... - gi\|83749237\|ref\|ZP_00946237.1\| Glucoamylase [Ralstonia solanacearum UW551], gi\|83724077\|gb\|EAP71255.... gi\|207743190, gi... - gi\|207743190\|ref\|YP_002259582.1\| glucoamylase or related glycosyl hydrolase protein [Ralstonia solan...	593.0	[0..15]	[639..1]
gi\|17428473 - gi\|17428473\|emb\|CAD15160.1\| putative glucoamylase or related glycosyl hydrolase protein [Ralstonia s... gi\|17546177 - gi\|17546177\|ref\|NP_519579.1\| hypothetical protein RSc1458 [Ralstonia solanacearum GMI1000]	584.0	[0..15]	[639..1]
gi\|28853539, gi\|... - gi\|28870292\|ref\|NP_792911.1\| glycosy hydrolase family protein [Pseudomonas syringae pv. tomato str. ... tr\|Q880N5\|Q880N5... - Glycosyl hydrolase, family 15 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_3119 PE=4 ...	579.0	[0..15]	[643..1]
gi\|23471839, gi\|... - gi\|66046217\|ref\|YP_236058.1\| glycoside hydrolase family protein [Pseudomonas syringae pv. syringae B...	574.0	[0..15]	[643..1]
gi\|134139668, gi... - gi\|67544997\|ref\|ZP_00422922.1\| Glycoside hydrolase, family 15 [Burkholderia vietnamiensis G4], gi\|67...	572.0	[0..15]	[639..1]
gi\|254434602, gi... - gi\|254434602\|ref\|ZP_05048110.1\| Glycosyl hydrolase, family 15 [Nitrosococcus oceani AFC27], gi\|22441... gi\|77165097, gi\|... - gi\|77165097\|ref\|YP_343622.1\| glycoside hydrolase [Nitrosococcus oceani ATCC 19707], gi\|76883411\|gb\|A... gi\|207090935 - gi\|207090935\|gb\|EDZ68206.1\| Glycosyl hydrolase, family 15 [Nitrosococcus oceani AFC27]	570.0	[0..19]	[644..6]
gi\|84362482 - gi\|84362482\|ref\|ZP_00987103.1\| COG3387: Glucoamylase and related glycosyl hydrolases [Burkholderia d...	569.0	[0..15]	[639..1]

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Predicted Domain #1

Region A:
Residues: [1-649]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPNARVSYG AEKYLPREID NHGIVGNMHT SAMISLDGSV EMMCWPNFDS PSIFARILDA  60
   61 RAGHFSITPI EQTSCKQMYE PSTNILHTKF YSERGVLRLL DFFHRPWEDY EPLYPWLIRR 120
  121 VSCIRGTSRI KLECFPALDY ARQSHETRVS KITENYYQAE FVPASGDPKY ILDCVPSGDQ 180
  181 LKIDLELIYP AEHLIEGGGV ISYLELEEGQ EITFIFRQEG LGPNVDYVTP NLVDKLEDST 240
  241 KRYWRAWIQQ CVYTGRYREF VQRNALTLKL LIYEPTGAVI ASPTFSLPED LGGVRNWDYR 300
  301 FTWIRDSAFT IYALAQLGFR AEAVEYMSFI YHVLKKKNKD GGINIVYSIH GDSQNLEEVE 360
  361 LTHLRGYYNS HPVRIGNAAV HHLQLDIYGE LMDSIYIYDK KCQPIAYDLW LEVRQICDYV 420
  421 CANWKRPDKS IWEVRGQERN FLYSKIMLWV ALDRALRIAF TRSLPCPKHM VWMDTRDEIY 480
  481 EAIMDSGYNM EKGFFAQSFE NNDILDASVL VMPLVSFISP TDPRFLSTMD NIMKPLEKDG 540
  541 LMSNGLIFRY NNFVYEDGVG GDEGAFTMVC FWLVEALAMA GCSGYPKLLS TAVSMFEDLV 600
  601 RYSSHLQYYS EECSLSSESL GNSPQAFSSI AAIAAAHILD KALSIFNEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	1lf6A
Description:	Bacterial glucoamylase, C-terminal domain; Bacterial glucoamylase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.12652197038579	bayes_pls_golite062009
trehalase activity	0.847174589094813	bayes_pls_golite062009
catalytic activity	0.770933849734279	bayes_pls_golite062009
alpha,alpha-trehalase activity	0.711518852337884	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.68102716507433	bayes_pls_golite062009
racemase and epimerase activity	0.473636146090495	bayes_pls_golite062009
isomerase activity	0.106573908779409	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: