| Protein: | pkd2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 710 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pkd2.
| Description | E-value | Query Range |
Subject Range |
|
|
738.0 | [0..1] | [705..4] |
|
|
737.0 | [0..3] | [705..1] |
|
|
724.0 | [0..21] | [709..20] |
|
|
714.0 | [0..3] | [707..1] |
|
|
711.0 | [0..2] | [705..378] |
|
|
689.0 | [0..19] | [705..19] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MRLWRSPLLL LVVVVELFSW ADALTRFISA DSLSTCMTDS QLSASKLYAS YFPDNQSVAF 60
61 DISIQSLVST NVSIDVDISA YGIEIKKVID PCDMEISGFC PMQTGNIALS GSHTLTGEAL 120
121 SILDSIPSIA YTVPDLDAVV TINIYESDTN
|
| Detection Method: |  |
| Confidence: | 1.6 |
| Match: | 2agcA |
| Description: | Crystal Structure of mouse GM2- activator Protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [151-400] |
1 11 21 31 41 51
| | | | | |
1 TQLACVRTTV QNGRSVYHRA VYWVMCMVIG IPLLIFLLIS PVLQTPALWE IVETMITLFQ 60
61 FAQIQALYSM MATSLPAIIY SWGRNFMWSM GIIRIGFMQD VFTWYVKSTG GTPSTLVDLG 120
121 IHANVALAKR GIDLGSLAKR ATTTVTTSTS DSITLRGIKR ISYMMGIETT NFFATGFSFF 180
181 IILLFFSLLV AMASRFIVEM VLLASRNQAL KKQRIRLYWK SISKGFFYRV IFVGFTQMSV 240
241 LSMWEIYTRD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [401-588] |
1 11 21 31 41 51
| | | | | |
1 SSALAFLSMY VIVDMAVLLC YAFVRTIQII RKTGPYSHPD VLYNLYSDTQ HLMRWGFMYV 60
61 QLDVRFFYFT FPLLLITLVR SMFIGFGQGS PKVQGCAMFG ISVVVFALMV ILRPYATKHM 120
121 NTLHIGVALM NLISGSFILV MCQAFYVEEL ARQVIGIIFF ALNAITMLLL ILGIFIRTLI 180
181 VLFRKSGH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [589-710] |
1 11 21 31 41 51
| | | | | |
1 GTYYRILDDQ SEKATSYNKS IKDMSSSDMA FSDPAYSGTT LRSSVDLNTP EYPFSNRNDS 60
61 DSTFTNNKYV SPWDAIEEAS YANLRGNTDV EQPFMESDYT RISENNNNAE RRRKPLPNNA 120
121 FR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.233 | 0.053 | calcium channel activity | a.74.1 | Cyclin-like |
| View | Download | 0.261 | N/A | N/A | f.1.5 | Exotoxin A, middle domain |
