YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC12G12.10
Organism:	Schizosaccharomyces pombe
Length:	420 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC12G12.10.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	301.0	[0..13]	[419..1283]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	298.0	[0..12]	[419..1016]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	295.0	[0..13]	[419..1113]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	291.0	[0..22]	[419..835]
gi\|37521534, gi\|... - gi\|37521534\|ref\|NP_924911.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35212...	286.0	[0..12]	[419..677]

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Predicted Domain #1

Region A:
Residues: [1-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLPFHIPG YYYNSEKKRY FRIISSGQST PSSNIYTKER LKRGKRFNNI SKERTKGKGG  60
   61 NPVFNFSTYL FDRQFSQYPY SCNDDRDYLC AKNLKKINLR QLPVGTELQK IGWLREVNTI 120
  121 ILTSKNGDIL GCCLTPEDKS GVANEKYTSE GSIQDFSLSR IGLSNNPISS LVCNAMQIFW 180
  181 STSPSLQNEG QFHISTYNQL LGESNNYRWG SLKLLKTPLC AESIGEMGFA VGGTSKIAII 240
  241 NREGKLTQSL QSKGDVFSLK YLGDNLVIAG CRNKSVLVYD LRTKKECVQR FYHGSSICSM 300
  301 QNLDFSQPKL LVSGLESKIS LYDCRFLQSK KRPQSIMSYM GHSNLLERNL ALMKNENGSI 360
  361 FSSAGDDYVL RFWKTDCSLP FKEMRVDDGK YLCRDGSWVK AMNGTGWVLP YGRGLLIYEP 420
  421

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1p22A
Description:	F-box/WD-repeat protein 1 (beta-TRCP1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.04720267788917	bayes_pls_golite062009
protein binding	0.0109071915022965	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: