YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC16C9.03
Organism:	Schizosaccharomyces pombe
Length:	498 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC16C9.03.

Description	E-value	Query Range	Subject Range
gi\|44983944 - gi\|44983944\|gb\|AAS52980.1\| AER299Cp [Ashbya gossypii ATCC 10895] gi\|44983944, gi\|... - gi\|45190902\|ref\|NP_985156.1\| AER299Cp [Ashbya gossypii ATCC 10895], gi\|44983944\|gb\|AAS52980.1\| AER29...	712.0	[0..3]	[498..1]
gi\|46136489, gi\|... - gi\|46136489\|ref\|XP_389936.1\| hypothetical protein FG09760.1 [Gibberella zeae PH-1], gi\|42553103\|gb\|E...	695.0	[0..1]	[498..3]
gi\|74003699 - gi\|74003699\|ref\|XP_545261.2\| PREDICTED: similar to NMD3 homolog [Canis familiaris]	694.0	[0..17]	[493..176]
gi\|50752520 - gi\|50752520\|ref\|XP_422813.1\| PREDICTED: similar to Hypothetical protein MGC76205 [Gallus gallus]	693.0	[0..14]	[493..171]
NMD3 - Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter... NMD3_YEAST - 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD3 P... gi\|207344532 - gi\|207344532\|gb\|EDZ71647.1\| YHR170Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405947 - gi\|190405947\|gb\|EDV09214.1\| factor required for a late assembly step of the 60S subunit [Saccharomyc...	691.0	[0..3]	[498..1]
NMD3 - NMD3 homolog (S. cerevisiae) gi\|190691981, gi... - gi\|190691981\|gb\|ACE87765.1\| NMD3 homolog (S. cerevisiae) protein [synthetic construct], gi\|190690621...	689.0	[0..16]	[493..9]
gi\|238880086 - gi\|238880086\|gb\|EEQ43724.1\| nonsense-mediated mRNA decay protein 3 [Candida albicans WO-1] orf19.8325, orf1... - NMD3 CGDID:CAL0001704 Assembly 19, Contig19-10065 (39364, 40926) CDS, translated using codon table 1... gi\|46433122, gi\|... - gi\|68488780\|ref\|XP_711779.1\| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida albica...	687.0	[0..4]	[498..3]
gi\|55727749 - gi\|55727749\|emb\|CAH90625.1\| hypothetical protein [Pongo abelii] NMD3_PONAB - 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1	687.0	[0..16]	[493..9]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMDSGSMGV AFQPSEPIAS TILCCECGVP TPPNAAAMCM DCIKMTTDIT SGIPRESTVN  60
   61 HCRECERYMQ PPNNWMIAPL ESRELMAICL KKLRGLNQVR LVDANFIW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEPHSRRIKV KLTVQKEAFT NTILQQSFQV EFYVNNTQCP DCARTYTPHI WKAVCQVRQK  60
   61 VLHKRTFLYL EQIILKHKAH MNTVNIKETK DGIDFYFGQR AHAIKMVEFL SAVVPIRYKG 120
  121 SEELISEDFK SNTANYKFTY SIEIVPICK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [258-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLVCLPKTV AKAHGNIAQL VVCTKVGPTI RFLDPLTLQT CDMLPSIYWR TPFPALADIP  60
   61 ELTEFIVADV DLLGPTNGKY ALADVELIKS SDGSTHLTRT HLGGILNAGN TVLAYHLAVT 120
  121 NFNNEVYDTL REDSIPEVVI VKKTYPQTKK KNRNWRLKTI GMQKAEDVKK QDIERQERDY 180
  181 ELFLQNLEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [447-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPELRQGVNL YKAPVKAIAV ADTDMDEEDE VDEDIPQISV DELLDDVEAM HI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits