YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC13G6.15c
Organism:	Schizosaccharomyces pombe
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC13G6.15c.

Description	E-value	Query Range	Subject Range
gi\|23620412 - gi\|23620412\|gb\|AAH38509.1\| RCAN2 protein [Homo sapiens] gi\|123981510, gi... - gi\|123996339\|gb\|ABM85771.1\| Down syndrome critical region gene 1-like 1 [synthetic construct], gi\|12...	212.0	[0..3]	[157..22]
gi\|114607646, gi... - gi\|114607648\|ref\|XP_518517.2\| PREDICTED: Down syndrome critical region gene 1-like 1 protein isoform...	211.0	[0..3]	[157..68]
gi\|109071383, gi... - gi\|109071389\|ref\|XP_001102066.1\| PREDICTED: Down syndrome critical region gene 1-like 1 isoform 3 [M...	210.0	[0..3]	[157..68]
gi\|113911991 - gi\|113911991\|gb\|AAI22720.1\| RCAN2 protein [Bos taurus]	210.0	[0..3]	[157..68]
gi\|73973075 - gi\|73973075\|ref\|XP_852304.1\| PREDICTED: similar to Down syndrome critical region gene 1-like 1 isofo...	210.0	[0..3]	[157..17]
RCAN2_RAT - Calcipressin-2 OS=Rattus norvegicus GN=Rcan2 PE=2 SV=1	207.0	[0..3]	[157..22]
RCAN2_MOUSE - Calcipressin-2 OS=Mus musculus GN=Rcan2 PE=1 SV=1	207.0	[0..3]	[157..22]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVFTTSPDH VDELNEFVQQ LNPVAFTRVL RGLGKVLASY NDKAVEEDTL KKSSTGSLPS  60
   61 GQQVHCQYVL DDPNHVEGIS VDQSLQVPKF EKNWLISPPG SPPVGWEPIV EESPNSQHLA 120
  121 HDIQLKLDEL GNALLNDHSA GPQIVISEHN NTKETSPSRQ FEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1weyA
Description:	Solution structure of RRM domain in calcipressin 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	3.64400841800969	bayes_pls_golite062009
nucleic acid binding	3.18221750600272	bayes_pls_golite062009
RNA binding	2.25701618391425	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
mRNA binding	1.01333229070461	bayes_pls_golite062009
transcription regulator activity	0.400831329848221	bayes_pls_golite062009
DNA binding	0.341018037712367	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: