| Protein: | vps16 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 835 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps16.
| Description | E-value | Query Range |
Subject Range |
|
|
730.0 | [0..6] | [831..3] |
|
|
717.0 | [0..5] | [815..1] |
|
|
713.0 | [0..7] | [823..5] |
|
|
698.0 | [0..6] | [830..4] |
|
|
697.0 | [0..5] | [815..1] |
|
|
694.0 | [0..5] | [815..1] |
|
Region A: Residues: [1-429] |
1 11 21 31 41 51
| | | | | |
1 MEPSIKYPIY EWELLQDTYY QKSAIGKAEW EYIDPVDFMF AVAPCGGAIA ITRSESNLQS 60
61 NYKYDQVPMY SICVFCLSGQ LLQTLTWDKT SLVGMGWNEN EELIVVSKQG QVRVYNLLGE 120
121 FHQFSLGKGV ENIGIRECQF SEGGVFALLQ NDTFISITGF EEPWRKTYAS IPFNTLEYYN 180
181 IDSWALIPNP FSPDLGMDIV VTVGPHILQI DEQDSQLHSI SSLQHVSHIS ISPNARYLAL 240
241 YESVGKVRVI SSDFSKELLD LRLPETVAEA SLKQMAWCGN DAVVLVHENL LTLVGPFGGS 300
301 VPYLYNHTPI VSTEVDGVRI LTKDSSEFLR KVPAPLENIF HIGSKTPGAK LVEAFQKMKL 360
361 KSVFAEKMLL ELKDELHDAV DTCVQASLNE FSIEWQKVLL EAASLGKNSL RMYNHQEYVD 420
421 VCRELRVLN
|
| Detection Method: |  |
| Confidence: | 35.154902 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 2.43959139856243 | bayes_pls_golite062009 |
| binding | 2.2778252170547 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.20122168933317 | bayes_pls_golite062009 |
| protein binding | 1.24173112731149 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| actin filament binding | 0.707257679204688 | bayes_pls_golite062009 |
| tubulin binding | 0.356901755730737 | bayes_pls_golite062009 |
| microtubule binding | 0.291759739904529 | bayes_pls_golite062009 |
| hydrolase activity | 0.28424525033024 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [430-657] |
1 11 21 31 41 51
| | | | | |
1 AARDPNVGIY ITHEEYLHLG LERLIQRFSC RQLYGLAVQA SMWMQIPCDW VYIQWAQTYI 60
61 KQSSEPEEVV LDNIVKRLSS RKYISYEKIA RTAYQEGRLI LSTKLLDFEP LAKHQVMLLL 120
121 NMEAYEQALK KVIETMDNNL IIYVVLQIKQ QMAIASFFQI LNEYPDAVKV YVEFAKKNDR 180
181 KTLHDFFYQD DNKQGIAVLA VEDTLKTATV NQRITSLKSA AKVCSESK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [658-835] |
1 11 21 31 41 51
| | | | | |
1 ELSLEEKCLG DEIKLLQLQQ TYEDQFTGNF VGLTVNEVVV KLIQINQTQR ANKLRSDFQI 60
61 PEKRFAWLKL RALVAIRDWV QIEQWAGSMR RSPIGFEPFV TEILSAGNKK EAAKYIPRCT 120
121 QLTTQEKVDM WVQVGDVKSA SEEAAKSKSG SVLGDLLERV QTMPESRFVQ NALDQLRR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
