YRC Public Data Repository - Protein Structure Prediction

Protein:	vma8
Organism:	Schizosaccharomyces pombe
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma8.

Description	E-value	Query Range	Subject Range
vha-14 - Membrane-associated atpase gamma chain status:Confirmed UniProt:P34462 protein_id:CAA81600.1	279.0	[0..2]	[254..4]
VATD_CAEBR - V-type proton ATPase subunit D OS=Caenorhabditis briggsae GN=vha-14 PE=3 SV=1 gi\|157774515 - gi\|157774515\|ref\|XP_001665323.1\| hypothetical protein CBG10070 [Caenorhabditis briggsae AF16]	277.0	[0..2]	[254..5]
gi\|145019552, gi... - gi\|39971541\|ref\|XP_367161.1\| hypothetical protein MGG_07086 [Magnaporthe grisea 70-15], gb\|EAA56731....	275.0	[0..2]	[256..3]
gi\|44980563, gi\|... - gi\|45184954\|ref\|NP_982672.1\| AAR130Cp [Ashbya gossypii ATCC 10895], gi\|44980563\|gb\|AAS50496.1\| AAR13... gi\|44980563 - gi\|44980563\|gb\|AAS50496.1\| AAR130Cp [Ashbya gossypii ATCC 10895]	269.0	[0..3]	[255..2]
gi\|49648115 - gi\|49648115\|emb\|CAG80433.1\| YALI0D00583p [Yarrowia lipolytica] gi\|50549553, gi\|... - gi\|50549553\|ref\|XP_502247.1\| YALI0D00583p [Yarrowia lipolytica], gi\|49648115\|emb\|CAG80433.1\| unnamed...	267.0	[0..1]	[256..1]
gi\|67515657, gi\|... - gi\|67515657\|ref\|XP_657714.1\| hypothetical protein AN0110.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	266.0	[0..2]	[256..3]
VATD_NEUCR - (O59941) Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D ...	265.0	[0..2]	[249..3]
VATD_NEUCR - V-type proton ATPase subunit D OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / D... VATD_NEUCR - V-type proton ATPase subunit D OS=Neurospora crassa GN=vma-8 PE=2 SV=2	265.0	[0..2]	[256..3]
gi\|195488528, gi... - gi\|195488528\|ref\|XP_002092353.1\| GE11717 [Drosophila yakuba], gi\|194178454\|gb\|EDW92065.1\| GE11717 [D... Vha36-PA - The gene Vha36 is referred to in FlyBase by the symbol Dmel\Vha36 (CG8186, FBgn0022097). It is a pro... gi\|220955058, gi... - gi\|220955058\|gb\|ACL90072.1\| Vha36-PA [synthetic construct], gi\|220945146\|gb\|ACL85116.1\| Vha36-PA [sy...	263.0	[0..1]	[244..1]
VMA8 - Subunit D of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), a... gi\|207346112 - gi\|207346112\|gb\|EDZ72709.1\| YEL051Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405515 - gi\|190405515\|gb\|EDV08782.1\| vacuolar ATP synthase subunit D [Saccharomyces cerevisiae RM11-1a] gi\|151944661 - gi\|151944661\|gb\|EDN62920.1\| conserved protein [Saccharomyces cerevisiae YJM789] VATD_YEAST - V-type proton ATPase subunit D OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA8 PE=1...	263.0	[0..1]	[258..1]

Back

Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKQRENVF PTRMTLTTMK TRLKGAQTGH SLLKRKSEAL KKRFREIVVN IEQAKQKMGR  60
   61 VMQIAAFSMA EVGFAMGNNI NFEIQQSVKQ PRLRVRSKQE NISGVFLPTF EMNLDESIDD 120
  121 FQLTGLGKGG QQIQKARQVY EKAVETLVQL ASYQSAFVLL GDVLQMTNRR VNSIEHIIIP 180
  181 RLENTIKYIE SELEELERED FTRLKKVQKT KENAEKADSV TKEEHQGGSN TLQQTKDVGG 240
  241 AIAPAAEVGK EVINEVENSK DDTYSLPSTS TDDEEENDSD EEVIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	104.744727
Match:	PF01813.8
Description:	No description for PF01813.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits