YRC Public Data Repository - Protein Structure Prediction

Protein:	vma6
Organism:	Schizosaccharomyces pombe
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma6.

Description	E-value	Query Range	Subject Range
gi\|195163936, gi... - gi\|195163936\|ref\|XP_002022805.1\| GL14761 [Drosophila persimilis], gi\|194104828\|gb\|EDW26871.1\| GL1476... gi\|54643481, gi\|... - gi\|54643481\|gb\|EAL32225.1\| GA15530 [Drosophila pseudoobscura pseudoobscura], gi\|125982805\|ref\|XP_001... gi\|54643481\|gb\|E... - GA15530-PA [Drosophila pseudoobscura], GA15530 [Drosophila pseudoobscura pseudoobscura]	450.0	[0..2]	[342..4]
gi\|95102858, gi\|... - gi\|95102858\|gb\|ABF51370.1\| H+ transporting ATPase V0 subunit D [Bombyx mori], gi\|114051764\|ref\|NP_00...	450.0	[0..1]	[342..1]
VA0D_MANSE - V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1	450.0	[0..1]	[342..1]
VhaAC39-PA - The gene Vacuolar H<sup>+</sup>-ATPase C39 subunit is referred to in FlyBase by the symbol Dmel\VhaA... gi\|194131180, gi... - gi\|195340927\|ref\|XP_002037064.1\| GM12314 [Drosophila sechellia], gi\|194131180\|gb\|EDW53223.1\| GM12314... gi\|220956386 - gi\|220956386\|gb\|ACL90736.1\| VhaAC39-PA [synthetic construct]	450.0	[0..2]	[342..4]
gi\|157128068, gi... - gi\|94469114\|gb\|ABF18406.1\| vacuolar H+-ATPase V0 sector subunit d [Aedes aegypti], gi\|157128068\|ref\|...	449.0	[0..1]	[342..1]
gi\|91083331 - gi\|91083331\|ref\|XP_974905.1\| PREDICTED: similar to 40-kDa V-ATPase subunit [Tribolium castaneum]	448.0	[0..1]	[342..1]
gi\|118781070, gi... - gi\|118781070\|ref\|XP_311260.3\| ENSANGP00000011974 [Anopheles gambiae str. PEST], gi\|116130248\|gb\|EAA0...	446.0	[0..1]	[342..1]
gi\|66548758 - gi\|66548758\|ref\|XP_393438.2\| PREDICTED: similar to Vacuolar ATP synthase subunit d 1 (V-ATPase d sub...	444.0	[0..1]	[342..1]
gi\|50753561 - gi\|50753561\|ref\|XP_414041.1\| PREDICTED: similar to Ac39/physophilin [Gallus gallus]	444.0	[0..4]	[342..7]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALSFNTNS GYIEALVRGY ESALLEQHIY SNLSQCESLE DFRLQLSSTD YGGFLANQSK  60
   61 LTSSIISAKA TEKLLDEFDL IRRQADETLS KFMDYITYAY MIDNIMLLLT GTVNGQDTHD 120
  121 LLERCHPLGW FETLPALCVA TNVEELYSVV LIETPLAPYF KDCLSADDLD EQHIEIIRNT 180
  181 LYKAYLEDFY NFCKKIGACT ADTMLPILEF EADRRAITIT INSFGTELSK EERAKMYPSF 240
  241 GRLYPFSTSI LARAENAGDV ENACSLVKEY SDFFDQNSQK SLDDHFNEKE VELNKLAFLQ 300
  301 QFHYGIVYAF LKLREQEIRN LTWIAECISQ NQRDRALNIV PIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	1r5zA
Description:	Crystal Structure of Subunit C of V-ATPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits