YRC Public Data Repository - Protein Structure Prediction

Protein:	vas2
Organism:	Schizosaccharomyces pombe
Length:	980 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vas2.

Description	E-value	Query Range	Subject Range
gi\|49651523, gi\|... - gi\|50556490\|ref\|XP_505653.1\| YALI0F20218p [Yarrowia lipolytica], gi\|49651523\|emb\|CAG78462.1\| YALI0F2... gi\|49651523 - gi\|49651523\|emb\|CAG78462.1\| YALI0F20218p [Yarrowia lipolytica]	808.0	[0..25]	[976..20]
gi\|46431161, gi\|... - gi\|68492345\|ref\|XP_710060.1\| probable valyl-tRNA synthetase [Candida albicans SC5314], gi\|46431161\|g... orf19.1295 - VAS1 CGDID:CAL0003105 Assembly 19, Contig19-10108 (4035, 676) CDS, reverse complemented, translated ...	800.0	[0..10]	[976..64]
VARS - valyl-tRNA synthetase	800.0	[0..8]	[978..211]
gi\|50418991, gi\|... - gi\|50418991\|ref\|XP_458016.1\| hypothetical protein DEHA0C08525g [Debaryomyces hansenii CBS767], gi\|49...	799.0	[0..1]	[976..1]
gi\|114606511, gi... - gi\|114606511\|ref\|XP_518361.2\| PREDICTED: valyl-tRNA synthetase isoform 3 [Pan troglodytes], gi\|11460...	799.0	[0..8]	[978..211]
SYVC_RAT - Valine--tRNA ligase OS=Rattus norvegicus GN=Vars PE=2 SV=2	796.0	[0..8]	[978..211]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKGCEAAQ SKDSSAPGSG EPRPKTEKEL ERERQKAAKL EKYHAKLAAK KAKEEARKPK  60
   61 LDKKAKIASP VAEYVEKTTP GEKKVLQDLD SP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [93-980]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALKSYNPKAV ESAWYDWWVK SGFFEPEFGP DGKPKKEGVF VITSPPPNVT GALHIGHALT  60
   61 IAIQDSLARW NRMLGKTVLF LGGFDHAGLS TQSVVEKKLW YTQKKTRHDY PRDKFVDIVW 120
  121 EWKEEYHNRI KNQMSRLGGS FDWTREAFTM DENLSRAVVE TFVRLHEENI IYRANRLVNW 180
  181 CTALQTTLSN LEVENVDVPG RTLLKVPGYD EPVEVGVLTS IAYAVEGSDE RIVIATTRPE 240
  241 TLLGDTAVAV HPQDPRYKHL HGKFVKHPFC NRSIPIICDD IIVDMEFGTG AVKITPAHDP 300
  301 NDYEVGKRHN LEFINIFTDD GLLNENCGEF AGMKRFTARV KVVERLKELG LFVGTKENPM 360
  361 VIPLCGKTSD IIEPVMKPQW WVNQKEMAAA AAEVVKSGEI EIAPDMSRRE FIRWMENIQD 420
  421 WCISRQLWWG HRIPAYFVNL ADEPSQDRSE GRYWVTGRTL EQAEEKAKAA FPGKSFTLEQ 480
  481 DEDVLDTWFS SGLWPFSTLG WPKDTSDYEN FYPTTLMETG WDILFFWIAR MVMLGLKLTG 540
  541 KIPFKRVFCH ALVRDAQGRK MSKSLGNVVD PIDVIEGISL QALHDKLLVG NLDSREVEKA 600
  601 KKGQRLSYPK GIPQCGTDAL RFTLCSLTTG GRDLNLDILR VEGYRKFCNK LYNATKFALG 660
  661 RLGSNFVPNK TADLTGNESL VEKWIFHRLN IAAAAMNKNM EEMNFLQATS AVHQFWLYEL 720
  721 CDVYIENSKY LLSDGTEVQQ ESAKQTLYTV LDNALRLMHP FMPYVTEEMW QRLPRRPGDK 780
  781 TQTIVKAAFP VERVDYSNEI AAKYYESIIT VVHSTRSMMA ENGIKSDAVV YIHPDEEHSK 840
  841 LITSESASIQ SLIKKCKTLS IVDNTFDSDK CVKNEVLEGS TIFLERNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	177.0
Match:	1gaxA
Description:	Valyl-tRNA synthetase (ValRS) C-terminal domain; Valyl-tRNA synthetase (ValRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits