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View Structure Prediction Details

Protein: spo3
Organism: Schizosaccharomyces pombe
Length: 1028 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for spo3.

Predicted Domain #1
Region A:
Residues: [1-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILSVIRIF IYCLIRLFSF NSRKRNSSID ELERGEINAF ACDKQNTPSP NSECRPLTPL  60
   61 NSPFRRTVEG DTANLQAPSP TACPSFDSAS SIKSSKEDIA CRKLSTERFF YSPNGIDEMK 120
  121 KQQQFKKIPT VSITEVEPAF IPSNMEQALF SEEPFVIQDD LSHQINLDDN RKFSRIQKNK 180
  181 LDPLITVNLV PIVNGENCFN FYETQMETNF LSPEFIKKPS MVDHKRDSEI NAVTAVSADG 240
  241 SFSPLTETLS STISTLSNDS LDGLSSQKNE FTGFNSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [278-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEWIPNDTVD YICNSDASSV VSNLSDFEDC FDQFGVYDKE YEKKIEKTKR NFPKFQSSAT  60
   61 Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [339-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPFSAHHQAR RNNPQGFRNV KKRFQLFKDD CTALTDSDFL DALPFFNARV IIALYVEWRL  60
   61 RVYETMIIKG EESLKNLQRA RDGPHNKLWL GVFGNKDTIK KLSNYDRRAI S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [450-677]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPYVSNHLNF NVRRVKSDTV YIPTILQLLR SSTQLMTEQA FVASSNLKST KGLRETRLIQ  60
   61 KYKVKGDFEY VYAALYYAAF TQESTLKAVT IDDILSEDEL EDWWYLNLRY TSFITPQLCF 120
  121 EFLDKEADSC RDRLTEVKSE PPKAVIYEEP LNKLSRFSSD RLFTSHELVA IAELISLNEP 180
  181 PLESGKKFYY EEFQKACQKK RDDYRYSPEI EFKAAFREKF LQSNEKVP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [678-909]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPRPGEIYEK RCDYFSKYAC QNIFISKPLK RSGSIYEVFS DGIGRVIYGS VLDYEATRNN  60
   61 ILLHFGFEIH CAPSEEELIE REEAFKDFHN MLSFKYSANE IYEFCGTHSR AEVHKNEVLK 120
  121 RMAYYLIDEN KEISILRRIL SLRIVEPTTS FTRYEYDLWR TFYPDVLYLN YSKSGRIPTG 180
  181 SPYIMNGQWR KDLCVSTPPM VDINSALFPH WFKLSASNLF AGAEHAGLNR QK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [910-1028]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDKIDLDLYE PLPENSYLVA AELRVLRALR HKNPENIPLL EKWEVRALHQ LMAKIRKYYT  60
   61 VPTDYLSLRM DGLQAMLRKR EYMSCYTFNY FDYACLMDHA YRLYEGFNNQ VVNLPPRIM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.927 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle