YRC Public Data Repository - Protein Structure Prediction

Protein:	sod1
Organism:	Schizosaccharomyces pombe
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sod1.

Description	E-value	Query Range	Subject Range
gi\|5353561 - gi\|5353561\|gb\|AAD42179.1\| superoxide dismutase/HCV major epitope fusion protein [synthetic construct...	217.0	[0..3]	[153..4]
gi\|90301567, gi\|... - gi\|90301567\|gb\|EAS31198.1\| hypothetical protein CIMG_06677 [Coccidioides immitis RS], gi\|119183485\|r...	205.0	[0..5]	[153..119]
SODC_MACMU - Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3 SODC_MACFA - Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3 gi\|23503516 - gi\|23503516\|dbj\|BAC20348.1\| Cu,Zn-superoxide dismutase [Macaca fuscata] SODC_MACFU - Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3	200.0	[0..2]	[153..3]
SODC_CALJA - Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3	199.0	[0..2]	[153..3]
gi\|84579183 - gi\|84579183\|dbj\|BAE73025.1\| hypothetical protein [Macaca fascicularis]	199.0	[0..2]	[153..3]
gi\|13603739, gi\|... - gi\|13603739\|gb\|AAK31917.1\|AF248048_1 copper zinc superoxide dismutase [Cryptococcus neoformans var. ... gi\|58266258, gi\|... - gi\|58266258\|ref\|XP_570285.1\| copper zinc superoxide dismutase [Cryptococcus neoformans var. neoforma...	198.0	[0..1]	[153..1]
gi\|125586252, gi... - gi\|125586252\|gb\|EAZ26916.1\| hypothetical protein OsJ_10843 [Oryza sativa Japonica Group], gi\|1087081...	198.0	[0..1]	[152..119]
SODC_SAPAP - Superoxide dismutase [Cu-Zn] OS=Sapajus apella GN=SOD1 PE=2 SV=3	198.0	[0..2]	[153..3]
gi\|218564 - gi\|218564\|dbj\|BAA14373.1\| unnamed protein product [Schizosaccharomyces pombe]	198.0	[0..3]	[152..3]
gi\|194672519, gi... - gi\|76632745\|ref\|XP_584414.2\| PREDICTED: similar to Superoxide dismutase [Bos taurus], gi\|194672519\|r...	197.0	[0..3]	[153..43]

Back

Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRAVAVLRG DSKVSGVVTF EQVDQNSQVS VIVDLVGNDA NAKRGFHIHQ FGDNTNGCTS  60
   61 AGPHFNPEGK THGDRTAAVR HVGDLGNLES DAQGNIKTTF SDSVISLFGA NSIIGRTIVI 120
  121 HAGEDDLGKG TSEESLKTGN AGARNACGVI GIAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1n18A
Description:	Cu,Zn superoxide dismutase, SOD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein phosphatase 2B binding	13.5719110466797	bayes_pls_golite062009
superoxide dismutase activity	12.1093323949609	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	12.1093323949609	bayes_pls_golite062009
chaperone binding	5.11696266714142	bayes_pls_golite062009
superoxide dismutase copper chaperone activity	4.90125496493753	bayes_pls_golite062009
copper ion binding	4.51765925795625	bayes_pls_golite062009
protein phosphatase binding	3.26481550276071	bayes_pls_golite062009
phosphatase binding	3.1414149853516	bayes_pls_golite062009
transition metal ion binding	2.451533032488	bayes_pls_golite062009
binding	2.28211284921339	bayes_pls_golite062009
protein binding	1.96660745768497	bayes_pls_golite062009
enzyme binding	1.82618630359051	bayes_pls_golite062009
cation binding	1.79413011653575	bayes_pls_golite062009
metal ion binding	1.79413011653575	bayes_pls_golite062009
ion binding	1.78699219376941	bayes_pls_golite062009
catalytic activity	1.09233965765942	bayes_pls_golite062009
copper ion transmembrane transporter activity	0.658369569046781	bayes_pls_golite062009
metallochaperone activity	0.515959593535099	bayes_pls_golite062009
copper chaperone activity	0.412497194733789	bayes_pls_golite062009
ion transmembrane transporter activity	0.32642292951469	bayes_pls_golite062009
cation transmembrane transporter activity	0.262312399748454	bayes_pls_golite062009
zinc ion binding	0.25600715352161	bayes_pls_golite062009
antioxidant activity	0.240491838042064	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: