YRC Public Data Repository - Protein Structure Prediction

Protein:	sds23
Organism:	Schizosaccharomyces pombe
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sds23.

Description	E-value	Query Range	Subject Range
gi\|109101106 - gi\|109101106\|ref\|XP_001091081.1\| PREDICTED: similar to AMP-activated protein kinase, non-catalytic g...	157.0	[0..51]	[355..289]
gi\|148671138, gi... - gi\|74178482\|dbj\|BAE32497.1\| unnamed protein product [Mus musculus], gi\|148671138\|gb\|EDL03085.1\| prot...	157.0	[0..14]	[345..242]
gi\|114583373 - gi\|114583373\|ref\|XP_526030.2\| PREDICTED: AMP-activated protein kinase, non-catalytic gamma-3 subunit...	156.0	[0..51]	[355..282]
PRKAG2 - protein kinase, AMP-activated, gamma 2 non-catalytic subunit	155.0	[0..14]	[345..243]
gi\|38051932, gi\|... - gi\|38051932\|gb\|AAH60444.1\| MGC68503 protein [Xenopus laevis], gi\|148223982\|ref\|NP_001083495.1\| hypot...	154.0	[0..18]	[344..222]
gi\|77158179 - gi\|77158179\|gb\|ABA62105.1\| 5'-AMP-activated protein kinase gamma-2 non-catalytic subunit transcript ...	154.0	[0..51]	[344..274]

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Predicted Domain #1

Region A:
Residues: [1-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSTQSSDS LSSAGRQSFG VNSVSDFLAQ FPIPTNLPSN KWQDIPVTFL HDNEIALIDP  60
   61 ETSMEEASSI LIDRDLSALP IVAAKGSNEI ATTFDYADLN SFLLMVVGFD DFNDGRFKKV 120
  121 AEDIRAGKVI TAYEVAKLGK NKDDFITIPH TTSLGRLAEI LSSGIRRVAV TNEQGELSFM 180
  181 ASQRSIIRFL WNNIRAFPDL EPLMSRTIHS LDIGSTDITC ISGDQKVAAA LRQMNQTGIG 240
  241 SLAVVDAQFR LLGNISLVDV KYVTRSSSVY LLNKSCAHFL SVIKSEQGIR AGKDSAPAFN 300
  301 IYESSTFAFT LAKLVATQCH RLWLVQSPSC PPSPKNNAHL SPGSMGGVKV NQLLGVVSLT 360
  361 DIISVLYAHM KGTLPPAPHS APSLRHGRRG STSSHRSHSK ASVDTQRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	2v8qE
Description:	No description for 2v8qE was found.

Predicted functions:

Term	Confidence	Notes
binding	1.59201750877601	bayes_pls_golite062009
protein binding	1.3720766721692	bayes_pls_golite062009
protein kinase regulator activity	1.19302608513507	bayes_pls_golite062009
kinase regulator activity	1.03501428174027	bayes_pls_golite062009
protein serine/threonine kinase activity	0.465746674087961	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.435683587112279	bayes_pls_golite062009
protein kinase activity	0.330677170670397	bayes_pls_golite062009
kinase activity	0.220577864739804	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.201096375617966	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: