YRC Public Data Repository - Protein Structure Prediction

Protein:	spo20
Organism:	Schizosaccharomyces pombe
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spo20.

Description	E-value	Query Range	Subject Range
gi\|70999822, gi\|... - gi\|70999822\|ref\|XP_754628.1\| phosphatidylinositol transporter [Aspergillus fumigatus Af293], gi\|6685... gi\|159127642 - gi\|159127642\|gb\|EDP52757.1\| phosphatidylinositol transporter, putative [Aspergillus fumigatus A1163]	309.0	[0..2]	[284..13]
gi\|49095346, gi\|... - gi\|67537654\|ref\|XP_662601.1\| hypothetical protein AN4997.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	308.0	[0..2]	[285..10]
gi\|114193260, gi... - gi\|115396104\|ref\|XP_001213691.1\| Sec14 cytosolic factor [Aspergillus terreus NIH2624], gi\|114193260\|...	306.0	[0..2]	[284..12]
gi\|83767540 - gi\|83767540\|dbj\|BAE57679.1\| unnamed protein product [Aspergillus oryzae] gi\|169770423 - gi\|169770423\|ref\|XP_001819681.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238487164, gi... - gi\|238487164\|ref\|XP_002374820.1\| phosphatidylinositol transporter, putative [Aspergillus flavus NRRL...	302.0	[0..2]	[284..6]
gi\|119195149, gi... - gi\|90306964\|gb\|EAS36595.1\| SEC14 cytosolic factor [Coccidioides immitis RS], gi\|119195149\|ref\|XP_001...	302.0	[0..3]	[284..18]
gi\|39973897, gi\|... - gi\|39973897\|ref\|XP_368339.1\| hypothetical protein MGG_00905 [Magnaporthe grisea 70-15], gb\|EAA49247....	301.0	[0..3]	[284..15]
gi\|28921364, gi\|... - gi\|40804624\|emb\|CAF05884.1\| probable phosphatidylinositol/phosphatidylcholine transfer protein SEC14... gi\|85094558 - gi\|85094558\|ref\|XP_959907.1\| Sec14 cytosolic factor [Neurospora crassa OR74A]	295.0	[0..3]	[284..6]
gi\|88175766, gi\|... - gi\|88175766\|gb\|EAQ83234.1\| hypothetical protein CHGG_09638 [Chaetomium globosum CBS 148.51], gi\|1162...	295.0	[0..3]	[284..16]
gi\|29293650 - gi\|29293650\|gb\|AAO67520.1\| phosphatidylinositol-phosphatidylcholine transfer protein [Ajellomyces ca...	292.0	[0..3]	[285..16]
gi\|50907791, gi\|... - gi\|50907791\|ref\|XP_465384.1\| putative SEC14 cytosolic factor [Oryza sativa (japonica cultivar-group)...	291.0	[0..22]	[285..75]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETISDPYP LTNPNAPLGH PGHLNSTQQA TLDSMRLELQ KLGYTERLDD ATLLRFLRAR  60
   61 KFNLQQSLEM FIKCEKWRKE FGVDDLIKNF HYDEKEAVSK YYPQFYHKTD IDGRPVYVEQ 120
  121 LGNIDLKKLY QITTPERMMQ NLVYEYEMLA LKRFPACSRK AGGLIETSCT IMDLKGVGIT 180
  181 SIHSVYSYIR QASSISQDYY PERMGKFYVI NAPWGFSSAF NLIKGFLDEA TVKKIHILGS 240
  241 NYKSALLEQI PADNLPAKLG GNCQCPGGCE LSDAGPWHEE QWMNKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.0
Match:	1auaA
Description:	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P FROM SACCHAROMYCES CEREVISIAE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
vitamin E binding	7.60287756659728	bayes_pls_golite062009
phospholipid transporter activity	4.82372291869245	bayes_pls_golite062009
retinoid binding	4.17745094732125	bayes_pls_golite062009
isoprenoid binding	4.04814419024697	bayes_pls_golite062009
lipid transporter activity	3.98714900064429	bayes_pls_golite062009
phosphatidylinositol transporter activity	3.08477039249457	bayes_pls_golite062009
transporter activity	2.25865143268098	bayes_pls_golite062009
binding	2.07034659478808	bayes_pls_golite062009
substrate-specific transporter activity	1.84980732779905	bayes_pls_golite062009
vitamin binding	1.77103204070558	bayes_pls_golite062009
retinal binding	1.32654212303069	bayes_pls_golite062009
transmembrane transporter activity	1.14391953556505	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.418179505285201	bayes_pls_golite062009
protein binding	0.408110742195811	bayes_pls_golite062009
transcription regulator activity	0.265815679858875	bayes_pls_golite062009
protein transporter activity	0.0570899657188049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: