YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPBC17D1.03c
Organism: Schizosaccharomyces pombe
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC17D1.03c.

Description E-value Query
Range		 Subject
Range
PNP_CARHZ - Polyribonucleotide nucleotidyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 ...
 238.0 [0..13] [268..304]
gi|73993245 - gi|73993245|ref|XP_534492.2| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal RNA ...
 237.0 [0..17] [269..5]
RRP42_PYRFU - Exosome complex component Rrp42 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc...
ECX2_PYRFU - Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus GN=PF1567 PE=3 SV=1
 236.0 [0..15] [269..5]
gi|2815604 - gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens]
 236.0 [0..17] [269..3]
PNP_GEOKA - Polyribonucleotide nucleotidyltransferase OS=Geobacillus kaustophilus GN=pnp PE=3 SV=1
PNP_GEOKA - Polyribonucleotide nucleotidyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=pnp PE=3 SV...
 235.0 [0..2] [268..283]
PNP_PELUB - Polyribonucleotide nucleotidyltransferase OS=Pelagibacter ubique GN=pnp PE=3 SV=1
PNP_PELUB - Polyribonucleotide nucleotidyltransferase OS=Pelagibacter ubique (strain HTCC1062) GN=pnp PE=3 SV=1
 235.0 [0..17] [268..295]
PNP_CALS4 - Polyribonucleotide nucleotidyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (str...
PNP_THETN - Polyribonucleotide nucleotidyltransferase OS=Thermoanaerobacter tengcongensis GN=pnp PE=3 SV=1
 235.0 [0..8] [268..286]
gi|91718278, gi|... - gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ub...
 235.0 [0..17] [268..295]
ECX2_SULTO - Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii GN=ST0442 PE=3 SV=1
RRP42_SULTO - Exosome complex component Rrp42 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /...
 235.0 [0..10] [267..1]

Back

Predicted Domain #1
Region A:
Residues: [1-270] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVSGVKQL SFTPSIFKKI TPEQYLSHLL NQDVRSDGRS VSEFREIVIN DNCISTANGS  60
   61 AIIRAGENVF VCGIKAEIAE PFENSPNEGW IVPNLELSPL CSSKFKPGPP SDLAQVVSQE 120
  121 LHQTLQQSNL INLQSLCIFE KKAAWVLYAD IICLNYDGSA FDYAWAALFA ALKTVKLPTA 180
  181 VWDEDLERVI CASTLTRPVQ LSTEVRSFSW SVFDDKLLAD PTDEEEDLST EFLTIMLNSS 240
  241 KNIVKIIKLG GTHIQPLLLK KCIEVARSKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 2nn6C
Description: No description for 2nn6C was found.

Predicted functions:

Term Confidence Notes
exoribonuclease activity 7.55877202113513 bayes_pls_golite062009
ribonuclease activity 7.54644729272203 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 7.5310318714913 bayes_pls_golite062009
3'-5'-exoribonuclease activity 6.46930372693262 bayes_pls_golite062009
3'-5' exonuclease activity 4.29895100594643 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 3.83939403332553 bayes_pls_golite062009
exonuclease activity 3.40686901061667 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.86434572018929 bayes_pls_golite062009
RNA binding 2.05527376734941 bayes_pls_golite062009
structural constituent of ribosome 1.90115575554186 bayes_pls_golite062009
structural molecule activity 1.69321127364043 bayes_pls_golite062009
hydrolase activity 1.55476709794855 bayes_pls_golite062009
transcription regulator activity 1.20748032530392 bayes_pls_golite062009
mRNA binding 1.17402119891853 bayes_pls_golite062009
nucleic acid binding 1.05662964529454 bayes_pls_golite062009
binding 0.907487229190259 bayes_pls_golite062009
catalytic activity 0.878454819018611 bayes_pls_golite062009
DNA binding 0.828609700556836 bayes_pls_golite062009
nuclease activity 0.69721312877891 bayes_pls_golite062009
carbohydrate kinase activity 0.51810239718467 bayes_pls_golite062009
tRNA-specific ribonuclease activity 0.383567539949931 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.0287026367466632 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle