| Protein: | upf1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 925 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for upf1.
| Description | E-value | Query Range |
Subject Range |
|
|
854.0 | [0..5] | [901..82] |
|
|
854.0 | [0..5] | [901..85] |
|
|
854.0 | [0..5] | [901..84] |
|
|
851.0 | [0..5] | [901..79] |
|
|
851.0 | [0..5] | [901..79] |
|
|
850.0 | [0..5] | [895..63] |
|
Region A: Residues: [1-205] |
1 11 21 31 41 51
| | | | | |
1 MSLGLQPNND ISSLVSSKNM TSENGLEHQF EELLVEKQYS EEHCAYCHIK NPNSILKCLH 60
61 CNKWFCNVRG KSGASHIISH LVRARHKQVA LHSHSSLSDT VLECYNCGTR NVFLLGFIPA 120
121 KAKTVVVLLC RQPCARASIA KDMNWDLTQW QPIISDRQFL PWLITPPSEE EQKLAIPITS 180
181 QQMVRLEELW RKDPNANLED LDKPI
|
| Detection Method: |  |
| Confidence: | 80.69897 |
| Match: | 2iykA |
| Description: | No description for 2iykA was found. |
|
Region A: Residues: [206-270] |
1 11 21 31 41 51
| | | | | |
1 EDDSLPSVEL RYKDAHAYQA VLSPLIQAEA DYDKRLKESQ TQKDVVVRWD QAINKRYTAW 60
61 FLLPK
|
| Detection Method: | |
| Confidence: | 138.0 |
| Match: | 2gjkA |
| Description: | No description for 2gjkA was found. |
|
Region A: Residues: [271-390] |
1 11 21 31 41 51
| | | | | |
1 LESGEIRLAI GDEMKLTYEG ELRAPWSSTG YVIKIPNNVS DEVGLELKRS DKVPIECTHN 60
61 FSVDYVWKST SFDRMQTALR LFATDGSRLS SFLYHKLLGH DIPPSFLKPK LPSDLSVPNL 120
121
|
| Detection Method: | |
| Confidence: | 1.11 |
| Match: | 2gjkA |
| Description: | No description for 2gjkA was found. |
|
Region A: Residues: [391-515] |
1 11 21 31 41 51
| | | | | |
1 PKLNASQSEA VRAVLSKPLS LIQGPPGTGK TVTSASVVYH LATMQSRKRK SHSPVLVCAP 60
61 SNVAVDQLAE KIHRTGLRVV RVAAKSREDI ESSVSFLSLH EQIKNYKFNP ELQRLLKLRS 120
121 ENNEL
|
| Detection Method: | |
| Confidence: | 11.39794 |
| Match: | 1qhhA |
| Description: | DEXX box DNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [516-828] |
1 11 21 31 41 51
| | | | | |
1 SIQDEKKLRI LVAAAEKELL RAAHVICCTC VGAGDRRISK YKFRSVLIDE ATQASEPECM 60
61 IPLVLGAKQV VLVGDHQQLG PVVMNKKVAL ASLSQSLFER LIILGNSPFR LVVQYRMHPC 120
121 LSEFPSNTFY EGTLQNGVTT SERIARHVDF PWIQPDSPLM FYANFGQEEL SASGTSFLNR 180
181 TEASTCEKIV TTFLRSNVLP EQIGIVTPYD GQRSYIVQYM QNNGSMQKDL YKAVEVASVD 240
241 AFQGREKDFI ILSCVRSSEH QGIGFVNDPR RLNVALTRAK YGVIVLGNPK VLAKHALWYH 300
301 FVLHCKEKGY LVE
|
| Detection Method: | |
| Confidence: | 36.154902 |
| Match: | 1qhhB |
| Description: | STRUCTURE OF DNA HELICASE WITH ADPNP |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [829-925] |
1 11 21 31 41 51
| | | | | |
1 GTLNSLQKFS LTLTPPQKPQ KFKRDLNVQR SLSPIQNAGS AMLPSFSNLP NLYSSSYLEE 60
61 WNVFAQYKRR ESNATDFEDF RSQVGDDESK FDEPTRF
|
| Detection Method: | |
| Confidence: | 80.09691 |
| Match: | 2is1A |
| Description: | No description for 2is1A was found. |
