| Protein: | rga4 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 933 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rga4.
| Description | E-value | Query Range |
Subject Range |
|
|
399.0 | [0..49] | [933..8] |
|
|
298.0 | [0..24] | [932..79] |
|
|
289.0 | [0..147] | [932..585] |
|
|
287.0 | [0..147] | [932..585] |
|
|
286.0 | [0..128] | [932..566] |
|
|
285.0 | [0..206] | [932..127] |
|
|
285.0 | [0..191] | [932..115] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNSGTTLHLD RLSLETPSER TCFCIKCWES VPSTSQVWFG GKCWHSDCFK CVNCNKKLDP 60
61 SSEDFSQDDQ KQIFCKLCVD ICNGCSTPIC EFNAVSNSQA NHPCCSNCRA FINSNAFGKF 120
121 KGQHYCLPCL RKQDEENQ
|
| Detection Method: |  |
| Confidence: | 22.69897 |
| Match: | 1rutX |
| Description: | Complex of LMO4 LIM domains 1 and 2 with the ldb1 LID domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.32420977112004 | bayes_pls_golite062009 |
| protein binding | 1.39455913713025 | bayes_pls_golite062009 |
| transcription regulator activity | 1.18816040284456 | bayes_pls_golite062009 |
| DNA binding | 1.00346200943179 | bayes_pls_golite062009 |
| nucleic acid binding | 0.86280381479968 | bayes_pls_golite062009 |
| transcription factor activity | 0.441713135779151 | bayes_pls_golite062009 |
| receptor activity | 0.230063209127305 | bayes_pls_golite062009 |
|
Region A: Residues: [139-330] |
1 11 21 31 41 51
| | | | | |
1 KAVMESASGF IPLRNIAQTA ENTSLTGQNQ GFQNPHFIAS DSPSSVLSGR MQNTSSPTNS 60
61 LRPQLKVQTN GYETPGDINS AKSYKDIQKD FLLKPKNSFV KTSPSPLANG PSFRSANASP 120
121 FDSCDSFHSG SSIPIEPVSS RQSSVVNNNS VQQPVAYHAF VQSPTENGTL PQLPKNESVV 180
181 NPPPLRRSST MN
|
| Detection Method: | |
| Confidence: | 1.13 |
| Match: | 2fj7I |
| Description: | No description for 2fj7I was found. |
|
Region A: Residues: [331-608] |
1 11 21 31 41 51
| | | | | |
1 YKSVSTTTSP SKYGYVSGRI ALSPIHLRGA LRDVTNKCNL KVPRNRNSLS NLDEYYVNGL 60
61 ESDETPTKAR FPRYPTVFNK LDDKRLSSEP NGLKKRLTNS SNYEASPRAK SLNLSQVSLH 120
121 QACEPEYNRS SLVRASDVFT SNVFDATEES ANELAIRISE LQAEVGTLLL EATSLASIIE 180
181 QQTPVSPEAF KQELVADLNY RLDYLRKSFQ PELSTLLLRR DALSTTVSKL QNAYSTVMEE 240
241 TAYLNVKNTE LVSLNNQLER ELAYLREQQH KKRTSSSF
|
| Detection Method: | |
| Confidence: | 1.81 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [609-933] |
1 11 21 31 41 51
| | | | | |
1 GIFNNDKKSN RTISTPSPRE SFSRLQMVAS SLGFRPKDNK DKESGGYNKR NSKIDLKKSF 60
61 SKRFHWKRDS PHMSSTPSIS EEHLASEEQE DFVPAVGHCK LCGKYSNELR AHYQDCVSST 120
121 IDRQYQSKKS ESPVWALNPD DFDQNRLTLL RVPTLIVSCI NFIESYGMDF EGLYRKSGAT 180
181 SQMKKIVALL RNEDTVLDPS EDISAVTSVF KQYLRNLPNP IITYDQYFPF ITAANCASFQ 240
241 DKLDGFIMVI KSLPPAHAEI LQLIIRHLAR VAAYSHANRM TSKNLAVVFS PTLIRDPDNS 300
301 RDVIDMTVKN YSLAFLIDHV HEVFA
|
| Detection Method: | |
| Confidence: | 59.522879 |
| Match: | 1xa6A |
| Description: | Crystal Structure of the Human Beta2-Chimaerin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| Rho GTPase activator activity | 4.58620967349979 | bayes_pls_golite062009 |
| Rac GTPase activator activity | 4.48279904625182 | bayes_pls_golite062009 |
| GTPase regulator activity | 2.70614727793157 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 2.68579854252375 | bayes_pls_golite062009 |
| binding | 2.15139804299723 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 2.06038764955701 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.9750017471254 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.95738547986197 | bayes_pls_golite062009 |
| protein binding | 1.29100556128076 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 1.15190288326422 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 1.09070479183477 | bayes_pls_golite062009 |
| diacylglycerol binding | 1.04839041514795 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.03886555863373 | bayes_pls_golite062009 |
| Rho guanyl-nucleotide exchange factor activity | 0.967362611034944 | bayes_pls_golite062009 |
| Ras guanyl-nucleotide exchange factor activity | 0.958295643211986 | bayes_pls_golite062009 |
| actin binding | 0.841767135550505 | bayes_pls_golite062009 |
| GTPase activator activity | 0.717730683557543 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.38794676982412 | bayes_pls_golite062009 |
| enzyme activator activity | 0.298334474872045 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0455432286632499 | bayes_pls_golite062009 |
