YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC713.04c
Organism:	Schizosaccharomyces pombe
Length:	854 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC713.04c.

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	768.0	[0..7]	[847..730]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	684.0	[0..7]	[691..1165]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	671.0	[0..15]	[712..865]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	656.0	[0..5]	[670..1035]
gi\|118397021 - gi\|118397021\|ref\|XP_001030846.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila] gi\|118397021, gi... - gi\|89285162\|gb\|EAR83183.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila SB210], gi\|...	635.0	[0..1]	[848..1695]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	630.0	[0..15]	[672..569]
gi\|110168368, gi... - gi\|71673858\|ref\|ZP_00671606.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	620.0	[0..7]	[705..838]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEFGFSNL VGTIFSKGNL VFTPDGFSIL SPVGNRVSVY NLKDNTSYTF PFENHKNISH  60
   61 IALSPTSTLL LSVDEEGRCI LCNFLRRSVL HYFNFKSPVG AIEFSPNGKF FAVSLGKLIQ 120
  121 VWRTPNSLEE REFAPFVLHR EYTGHFDDIV SISWSADSRF FISTSKDLTA RLHSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	1nexB
Description:	Cdc4 F-box and linker domains; Cdc4 propeller domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [176-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPIEGFHPCA LTGHKNTVVS GFFSKDQQTI YTVSKDGALF VWKYSPLFQA GEVIDEEAEE  60
   61 NKTRTHIWLI KERHYFNQNS KLRCAAFHPT SNLLVVGFSS GLFGIYELPS FTMLYQLSIT 120
  121 QSNIDTLTVN STGDWIAIGS SKLGQLLVWE WQSESYVLKQ QSHYDALSTL QYSSDGQRII 180
  181 TGADDGKIKV WDMNSGFCIV TFTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.221849
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #3

Region A:
Residues: [380-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTSAVSGLCF SKRGNVLFSS SLDGSVRAWD LIRYRNFRTF TAPSRVQFSC IAVDPSGEIV  60
   61 CAGSQDSFEI FMWSVQTGQL LETLAGHEGP VSSLSFNSSG SLLASGSWDK TVRIWDIFSR 120
  121 SGIVEPLPIP SDVLSLAFHP DGKEVCVASL DGQLTFWNV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.72
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #4

Region A:
Residues: [539-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEGKQTSLID GRKDLSGGRR FDDARTAENS SLNKTFTSIC YSADGSCVLS AGTSKYVCLY  60
   61 DII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.221849
Match:	1trjA
Description:	Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [602-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGVLIKKFQL SKNESLQGVQ EMLNSRKMTE AGSIELIDTQ GEESDLEDRI DRTLPGARRG  60
   61 DLSARKTR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [670-854]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEIICHGVQF SPSGGAFAAA TTEGLMIYSL YNDFLFDPIN LDMDITPSTT LTMCAEGEFL  60
   61 ISLVMALRLN EYKVVQKVYE SIPITDVEHV VQELPVSYLA NFMGYLSSFA AETPHIEFHL 120
  121 RWMKSVLTYH GEYLRRKNFE FASQLTSLQK SIVVLSKRLS QLSSNNEFQL SFLLDKMHLR 180
  181 LENTA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.387216
Match:	PF04047.5
Description:	No description for PF04047.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits