YRC Public Data Repository - Protein Structure Prediction

Protein:	pop2
Organism:	Schizosaccharomyces pombe
Length:	703 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pop2.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	532.0	[0..119]	[702..1166]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	530.0	[0..74]	[701..901]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	524.0	[0..119]	[702..1038]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	494.0	[0..108]	[703..593]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSRCPTDN SSSRINSSVP LINSSSPATP PESFDPQVFP SSLIHGDNLL PQDDQIASDP  60
   61 RSESNSCNGN TSSSLPCTDS YQYPLKHSCT PSFLRKFNES IENVSYKCLD HSPPDSVPGD 120
  121 FSISLV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQRNFLYSHS SLPPKIISID RNNRIKLDNS ISSNSDNFPP SPKVDTSNTV SPGSKPISED  60
   61 LEDLNLQSIV QTFEDLPEGI QSYAFFQLLR SCN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [220-703]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQSMRLLLNE CEPLLKKDIL SNLPFSIVQS ILLNLDIHSF LSCRLVSPTW NRILDVHTSY  60
   61 WKHMFSLFGF QINENDWKYA NPNLNRPPFL HNDQISDDYF PEIFKRHFLN RKRWLFPSIP 120
  121 PSHLSFPIHV PNFMITSLLL HKDRIITTSG SGTIQIHNAI TGVLEARLEG HKEGVWAVKI 180
  181 HENTLVSGSI DKTVRVWNIE KAKCTHIFRG HISIIRCLEI LVPSRLIRHG VEIVEPDQPY 240
  241 IVSGSRDHTL RVWKLPKNTD PPYLPDNTNS IDRWEKNPYF VHTLIGHTDS VRTISGYGDI 300
  301 LVSGSYDSSI RIWRVSTGEC LYHLRGHSLR IYSVLYEPER NICISGSMDK SIRVWDLSTG 360
  361 TCKYVLEGHD AFVTLLNVFQ NRLISGSADS TIRIWDLNTG KPLMVLPSNS GYISSFVSDE 420
  421 HKIISGNDGS VKLWDVRTGK LLRFLLTDLT KIWHVDFDAM RCVAAVQRDD QAYLEVINFS 480
  481 GSRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.30103
Match:	1nexB
Description:	Cdc4 F-box and linker domains; Cdc4 propeller domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits