YRC Public Data Repository - Protein Structure Prediction

Protein:	pac2
Organism:	Schizosaccharomyces pombe
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pac2.

Description	E-value	Query Range	Subject Range
gi\|49091500, gi\|... - gi\|67525233\|ref\|XP_660678.1\| hypothetical protein AN3074.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	286.0	[0..1]	[212..121]
gi\|42552307, gi\|... - gi\|46138563\|ref\|XP_390972.1\| hypothetical protein FG10796.1 [Gibberella zeae PH-1], gi\|42552307\|gb\|E...	277.0	[0..1]	[210..1]
gi\|38110949, gi\|... - gi\|39977323\|ref\|XP_370049.1\| hypothetical protein MGG_06564 [Magnaporthe grisea 70-15], gb\|EAA56593....	275.0	[0..1]	[210..2]
gi\|119195069, gi... - gi\|90306924\|gb\|EAS36555.1\| hypothetical protein CIMG_01909 [Coccidioides immitis RS], gi\|119195069\|r...	270.0	[0..1]	[212..62]
gi\|115384696, gi... - gi\|115384696\|ref\|XP_001208895.1\| cAMP-independent regulatory protein pac2 [Aspergillus terreus NIH26...	269.0	[0..1]	[208..1]
gi\|32413340, gi\|... - gi\|32413340\|ref\|XP_327150.1\| hypothetical protein [Neurospora crassa], gi\|28919296\|gb\|EAA28759.1\| co... gi\|85089537 - gi\|85089537\|ref\|XP_957995.1\| hypothetical protein NCU06864 [Neurospora crassa OR74A]	256.0	[0..1]	[210..10]
gi\|70999876, gi\|... - gi\|70999876\|ref\|XP_754655.1\| camp independent regulatory protein [Aspergillus fumigatus Af293], gi\|6...	247.0	[0..1]	[212..1]
gi\|169625322, gi... - gi\|169625322\|ref\|XP_001806065.1\| hypothetical protein SNOG_15932 [Phaeosphaeria nodorum SN15], gi\|11...	245.0	[0..1]	[210..1]
YEL007W - Putative protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) MIT1_YEAST - Transcriptional regulator MIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIT1 PE=1...	240.0	[0..3]	[192..6]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTYTGIIKT PLDAIILFEA CRIGLLPRVQ RRLSDHERSL IRAGSVFVWD EREAGMRRWT  60
   61 DGKSWSASRV SGSFLTYREM EGKRKP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.443	0.733	cytosol	c.47.1	Thioredoxin-like
View	Download	0.383	0.024	nucleus	d.129.1	TATA-box binding protein-like
View	Download	0.508	0.003	molecular_function	d.110.1	Profilin (actin-binding protein)
View	Download	0.451	0.002	molecular_function	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.366	N/A	N/A	c.47.1	Thioredoxin-like

Predicted Domain #2

Region A:
Residues: [87-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHHGLSTDGS LKRSPSADTT GNSSLNAYSN EDSGAASLSD EESVDDENLR GLHYKPNGLI  60
   61 KQSFSITTSL NHKLHLISYS SPIPDPSLVT PSSDVNLSRI TIPYGLYPDA GPPLVQAPKF 120
  121 LAPYDILVEK VACSEDARVL DKLRQALWL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits