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View Structure Prediction Details

Protein: rex2
Organism: Schizosaccharomyces pombe
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rex2.

Description E-value Query
Range		 Subject
Range
gi|83727484, gi|... - gi|83745794|ref|ZP_00942851.1| Oligoribonuclease [Ralstonia solanacearum UW551], gi|83727484|gb|EAP7...
 176.0 [0..2] [179..94]
ORN_RALSO - Oligoribonuclease OS=Ralstonia solanacearum (strain GMI1000) GN=orn PE=3 SV=1
ORN_RALSO - Oligoribonuclease OS=Ralstonia solanacearum GN=orn PE=3 SV=1
 172.0 [0..2] [179..24]
ORN_NITEU - Oligoribonuclease OS=Nitrosomonas europaea GN=orn PE=3 SV=1
ORN_NITEU - Oligoribonuclease OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=orn PE=3 SV=1
 171.0 [0..1] [180..1]
gi|37590357, gi|... - gi|41152197|ref|NP_957038.1| small fragment nuclease [Danio rerio], gi|37590357|gb|AAH59540.1| Small...
 170.0 [0..1] [179..1]
gi|56270497 - gi|56270497|gb|AAH87528.1| LOC496097 protein [Xenopus laevis]
 170.0 [0..6] [179..44]
gi|91696807, gi|... - gi|91787582|ref|YP_548534.1| oligoribonuclease [Polaromonas sp. JS666], gi|91696807|gb|ABE43636.1| E...
 170.0 [0..1] [179..8]
ORN_VIBPA - Oligoribonuclease OS=Vibrio parahaemolyticus GN=orn PE=3 SV=1
ORN_VIBPA - Oligoribonuclease OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=orn PE=3 SV=1
gi|149745937, gi... - gi|153840401|ref|ZP_01993068.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810], gi|149745937|gb|...
 170.0 [0..1] [179..1]
gi|84378257, gi|... - gi|84386967|ref|ZP_00989991.1| oligoribonuclease [Vibrio splendidus 12B01], gi|84378257|gb|EAP95116....
 169.0 [0..1] [180..1]
ORN_MARHV - Oligoribonuclease OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8) GN=or...
 168.0 [0..6] [179..5]
ORN_CHRVO - Oligoribonuclease OS=Chromobacterium violaceum GN=orn PE=3 SV=1
ORN_CHRVO - Oligoribonuclease OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 1261...
 168.0 [0..1] [179..1]

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Predicted Domain #1
Region A:
Residues: [1-180] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLKQPLVW IDCEMTGLEV GKHVLMEVAA IITDGNLRPV EEKFDAVIKL DEKQLSEMND  60
   61 WCIEQHGKSG LTERCRQSNL TVKDVENQLL AYIKKYIPKK REALIAGNSV HADVRFLSVE 120
  121 MPKIIEHLHY RIIDVSTIKE LAKRWCPDIP AYDKKGDHRA LSDILESIGE LQHYRSYWLS 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.0
Match: 1j9aA
Description: Oligoribonuclease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribonuclease activity 4.81599779544001 bayes_pls_golite062009
exoribonuclease activity 3.01417328311605 bayes_pls_golite062009
ribonuclease H activity 2.91966688044755 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 2.89077854960958 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.70794511869438 bayes_pls_golite062009
nuclease activity 2.65398446409354 bayes_pls_golite062009
endonuclease activity 2.63074055051349 bayes_pls_golite062009
endoribonuclease activity 2.59247838057313 bayes_pls_golite062009
hydrolase activity 2.41899414621161 bayes_pls_golite062009
transcription regulator activity 2.20855917457806 bayes_pls_golite062009
binding 1.8781442498221 bayes_pls_golite062009
endoribonuclease activity, producing 5'-phosphomonoesters 1.74431545836806 bayes_pls_golite062009
nucleic acid binding 1.72558334058697 bayes_pls_golite062009
DNA binding 1.62101283948059 bayes_pls_golite062009
endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.59628511603826 bayes_pls_golite062009
exonuclease activity 1.4327316829508 bayes_pls_golite062009
3'-5'-exoribonuclease activity 1.42069917818896 bayes_pls_golite062009
catalytic activity 1.25233849524628 bayes_pls_golite062009
1.18236432793831 bayes_pls_golite062009
transcription factor activity 0.971926865662649 bayes_pls_golite062009
3'-5' exonuclease activity 0.86862629020506 bayes_pls_golite062009
RNA binding 0.750194803368593 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.389326716045122 bayes_pls_golite062009
transcription activator activity 0.104967281174106 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle